BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC JC	REL606	2,397,529	IS150 (–) Δ14 bp	coding (1124‑1137/2646 nt)	yfcTU ←	predicted outer membrane export usher protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	2397529	2397542	14	66 [0]	[0] 89	yfcTU	predicted outer membrane export usher protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2397528	0 (0.000)	64 (1.000)	48/198	0.3	100%	coding (1138/2646 nt)	yfcTU	predicted outer membrane export usher protein
*	?	REL606	2774435 =	NA (NA)	64 (1.000)	48/198	0.3	100%	noncoding (1443/1443 nt)	IS150	repeat region
*	?	REL606	2397543 =	0 (0.000)	88 (1.400)	66/196	0.0	100%	coding (1123/2646 nt)	yfcTU	predicted outer membrane export usher protein
*	?	REL606	= 2775877	NA (NA)	88 (1.400)	66/196	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region

TTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCC  >  REL606/2397428‑2397624

ttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCActc                                                                                                  >  2:162335/1‑101 (MQ=255)

ttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCActc                                                                                                  <  2:1501452/101‑1 (MQ=255)

  aTCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtg                                                                                                >  1:649133‑M1/1‑99 (MQ=255)

   tctcCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt                                                                                               >  2:126480‑M1/1‑98 (MQ=255)

   tctcCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt                                                                                               >  1:1577727‑M1/1‑98 (MQ=255)

      cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact                                                                                            >  1:797318‑M1/1‑95 (MQ=255)

      cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact                                                                                            <  2:611128‑M1/101‑7 (MQ=255)

      cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtaca                                                                                            >  1:1321594‑M1/1‑95 (MQ=255)

        cAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgc                                                                                          >  2:1623752‑M1/1‑93 (MQ=255)

        cAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactaa                                                                                          >  1:1257613‑M1/1‑93 (MQ=255)

                 gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa                                                                                 <  1:55026‑M1/101‑18 (MQ=255)

                 gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa                                                                                 <  2:1682170‑M1/101‑18 (MQ=255)

                 gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa                                                                                 >  2:1043435‑M1/1‑84 (MQ=255)

                    atatAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagtt                                                                              >  2:1224653‑M1/1‑81 (MQ=255)

                       taGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttgga                                                                           <  1:1368386‑M1/101‑24 (MQ=255)

                          cGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacag                                                                        >  1:597040‑M1/1‑75 (MQ=255)

                              cAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa                                                                    <  2:354076‑M1/101‑31 (MQ=255)

                              cAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa                                                                    >  2:844421‑M1/1‑71 (MQ=255)

                               aaCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaa                                                                   <  2:281134‑M1/101‑32 (MQ=255)

                                aCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac                                                                  <  1:601737‑M1/101‑33 (MQ=255)

                                aCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac                                                                  <  1:1038338‑M1/101‑33 (MQ=255)

                                  cGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacac                                                                <  1:915288‑M1/101‑35 (MQ=255)

                                     tAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgag                                                             <  2:618962‑M1/101‑38 (MQ=255)

                                      aGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgagg                                                            <  2:206268‑M1/101‑39 (MQ=255)

                                       gCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggc                                                           <  1:362995‑M1/101‑40 (MQ=255)

                                         gATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcat                                                         >  1:1620247‑M1/1‑60 (MQ=255)

                                                  ggaggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg                                                >  2:1365954‑M1/1‑51 (MQ=255)

                                                    aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgat                                              >  2:414825‑M1/1‑49 (MQ=255)

                                                    aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgat                                              >  1:368154‑M1/1‑49 (MQ=255)

                                                    aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactaaccccaaaaagttggacagttaaacacgaggcatataggtctgat                                              <  2:1257608‑M1/101‑53 (MQ=255)

                                                      gCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattc                                            <  2:1382146‑M1/101‑55 (MQ=255)

                                                       cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattcc                                           >  2:23606‑M1/1‑46 (MQ=255)

                                                       cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattcc                                           >  1:955126‑M1/1‑46 (MQ=255)

                                                             cACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatatt                                     >  2:1642925‑M1/1‑40 (MQ=255)

                                                              aCCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattc                                    >  2:1624408‑M1/1‑39 (MQ=255)

                                                                 agagAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtacagaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaat                                 <  2:1321588‑M1/101‑66 (MQ=255)

                                                                    gaAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattgg                              <  1:1020949‑M1/101‑69 (MQ=255)

                                                                       aaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagt                           >  2:1072394‑M1/1‑30 (MQ=255)

                                                                       aaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagt                           >  2:560163‑M1/1‑30 (MQ=255)

                                                                        aaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtc                          <  2:475232‑M1/101‑73 (MQ=255)

                                                                          tCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcag                        <  2:269013‑M1/101‑75 (MQ=255)

                                                                          tCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcag                        >  1:1459279‑M1/1‑27 (MQ=255)

                                                                                cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt                  >  1:786759‑M1/1‑21 (MQ=255)

                                                                                cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt                  >  2:460819‑M1/1‑21 (MQ=255)

                                                                                cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt                  >  1:657794‑M1/1‑21 (MQ=255)

                                                                                cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt                  <  1:1336601‑M1/101‑81 (MQ=255)

                                                                                cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt                  >  1:358497‑M1/1‑21 (MQ=255)

                                                                                 tCGACATGGTGGCCCCACTCtgtactgcccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt                 <  1:1169707‑M1/101‑82 (MQ=255)

                                                                                 tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt                 <  1:461595‑M1/101‑82 (MQ=255)

                                                                                 tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt                 <  1:677060‑M1/101‑82 (MQ=255)

                                                                                  gaacaTGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta                >  2:1023410‑M1/3‑19 (MQ=255)

                                                                                  cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagtcctttta                >  2:1250797‑M1/1‑19 (MQ=255)

                                                                                  cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta                <  2:357262‑M1/101‑83 (MQ=255)

                                                                                   gACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaa               >  1:1546565‑M1/1‑18 (MQ=255)

                                                                                     cATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatt             >  1:1231174‑M1/1‑16 (MQ=255)

                                                                                         gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag         >  1:729903‑M1/1‑12 (MQ=255)

                                                                                         gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag         <  1:939168‑M1/101‑90 (MQ=255)

                                                                                         gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag         <  2:396305‑M1/101‑90 (MQ=255)

                                                                                          tggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcagg        <  2:1638328‑M1/101‑91 (MQ=255)

                                                                                           ggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggc       >  1:956307‑M1/1‑10 (MQ=255)

                                                                                           ggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggc       <  2:1597352‑M1/101‑92 (MQ=255)

                                                                                            gCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggct      >  2:145021‑M1/1‑9 (MQ=255)

                                                                                             annnnctctgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggcta     >  2:7620‑M1/6‑8 (MQ=255)

                                                                                              cccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaa    >  1:1061714‑M1/1‑7 (MQ=255)

                                                                                               ccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaat   <  2:804899‑M1/101‑96 (MQ=255)

                                                                                                cACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaatt  >  2:878050‑M1/1‑5 (MQ=255)

TTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCC  >  REL606/2397428‑2397624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`