| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | REL606 | 4,415,710 | IS150 (–) +3 bp | 94.5% | coding (848‑850/1413 nt) | cycA → | D‑alanine/D‑serine/glycine transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3893554 = | NA (NA) | 94 (0.990) | 55/80 | NT | 93.5% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 4415710 = | 6 (0.070) | coding (848/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | REL606 | = 3894996 | NA (NA) | 111 (1.200) | 53/78 | NT | 94.5% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 4415712 | 6 (0.070) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
Only 100 of 267 total aligned reads displayed.
TTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAA > REL606/4415662‑4415761 | tattaggggctattccatttcttcgtccaacaaaatgggtgcagtacattg < 1:7653445‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:7981828‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:1829456‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:10838083‑M2/3‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:1548043‑M2/48‑51 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:8474275‑M2/48‑51 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:10861556‑M2/48‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacattgttg > 1:8434245‑M2/46‑51 (MQ=255) tGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgt > 1:2829685‑M2/1‑48 (MQ=255) gTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgta < 1:2852090‑M2/51‑5 (MQ=255) gTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgta > 1:96315‑M2/1‑47 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAAc < 1:2369900‑M2/9‑1 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:6437857‑M2/1‑44 (MQ=255) gTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga < 1:8627149‑M2/51‑9 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGt > 1:8942593‑M2/40‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt < 1:502952‑M2/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt > 1:9275704‑M2/39‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTc > 1:3080595‑M2/38‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg < 1:10052844‑M2/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg > 1:8027040‑M2/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg < 1:6039236‑M2/15‑1 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc > 1:4960474‑M2/1‑39 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc < 1:9829511‑M2/51‑13 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt > 1:5870394‑M2/36‑51 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:4162709‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:1092562‑M2/51‑14 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt > 1:214186‑M2/34‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt < 1:3414025‑M2/18‑1 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt < 1:6685894‑M2/16‑1 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa < 1:8523450‑M2/51‑16 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa > 1:177481‑M2/1‑36 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa > 1:8477969‑M2/1‑36 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa < 1:678‑M2/51‑16 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga > 1:9095834‑M2/1‑36 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:5396305‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:2692537‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa < 1:3004394‑M2/51‑17 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:6132263‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa < 1:9418457‑M2/51‑17 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg < 1:10670034‑M2/21‑1 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag > 1:178839‑M2/1‑33 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag < 1:3519143‑M2/51‑19 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt > 1:2946277‑M2/1‑32 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt > 1:2497803‑M2/1‑32 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt < 1:5330294‑M2/51‑20 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg < 1:4922298‑M2/51‑22 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:700303‑M2/1‑30 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:3975478‑M2/1‑30 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:4694932‑M2/1‑30 (MQ=255) ttCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg > 1:523965/1‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg < 1:3457541‑M2/25‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg < 1:710904‑M2/25‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg < 1:1169772‑M2/25‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg > 1:2588273‑M2/26‑51 (MQ=255) gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGc > 1:6354726‑M2/25‑51 (MQ=255) gTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacag > 1:1707303‑M2/1‑25 (MQ=255) ccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:3752562‑M2/23‑51 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagt < 1:1343082‑M2/51‑28 (MQ=255) tCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa > 1:10763373‑M2/1‑21 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa < 1:4740328‑M2/51‑32 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa > 1:9395767‑M2/1‑20 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaac < 1:545919‑M2/51‑33 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:5921422‑M2/1‑19 (MQ=255) aaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct < 1:9701596‑M2/35‑1 (MQ=255) aaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct < 1:8134724‑M2/35‑1 (MQ=255) ggAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacac < 1:9331905‑M2/51‑35 (MQ=255) atgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCtgctgc > 1:3842774‑M2/15‑51 (MQ=255) tgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGcc > 1:1125767‑M2/14‑51 (MQ=255) tgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGcc < 1:5746875‑M2/38‑1 (MQ=255) gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa < 1:4086696‑M2/46‑31 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:6754873‑M2/39‑1 (MQ=255) agaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacga < 1:866359‑M2/51‑37 (MQ=255) agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg > 1:5912632/1‑51 (MQ=255) ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc < 1:4369537‑M2/40‑1 (MQ=255) ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc < 1:6476915‑M2/40‑1 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag < 1:10128290‑M2/51‑38 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:7631828‑M2/1‑14 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:4863082‑M2/1‑14 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:7126451‑M2/1‑14 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:6234241‑M2/51‑39 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg > 1:6942108‑M2/1‑13 (MQ=255) tgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCaa < 1:8235643‑M2/42‑1 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:6650978‑M2/1‑12 (MQ=255) aaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggca < 1:7734101‑M2/51‑41 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg > 1:8370985‑M2/8‑46 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:7056622‑M2/44‑1 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:3249387‑M2/7‑51 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:5474161‑M2/7‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGTTGCCTGCTGCCGCAAGCGTg > 1:5802353‑M2/5‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg < 1:4508527‑M2/47‑1 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1501661‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:9135780‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:4204235‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:5657244‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4296382‑M2/1‑7 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:1980855‑M2/1‑6 (MQ=255) gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg < 1:7336740‑M2/51‑47 (MQ=255) aTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATc < 1:10382096‑M2/50‑1 (MQ=255) aTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATc > 1:10090237‑M2/2‑51 (MQ=255) tgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCaa < 1:9954300/51‑1 (MQ=255) | TTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAA > REL606/4415662‑4415761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |