Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 4,415,710 | IS150 (–) +3 bp | 94.5% | coding (848‑850/1413 nt) | cycA → | D‑alanine/D‑serine/glycine transporter |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3893554 = | NA (NA) | 94 (0.990) | 55/80 | NT | 93.5% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 4415710 = | 6 (0.070) | coding (848/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
* | ? | REL606 | = 3894996 | NA (NA) | 111 (1.200) | 53/78 | NT | 94.5% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 4415712 | 6 (0.070) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
Only 100 of 269 total aligned reads displayed.
GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA > REL606/4415660‑4415760 | aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt < 1:2038806/51‑1 (MQ=255) aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt < 1:1480966/51‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg > 1:1012812‑M2/49‑51 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:1872996‑M2/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:7981828‑M2/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:8399511‑M2/3‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt < 1:10855270‑M2/4‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:8474275‑M2/48‑51 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:7657030‑M2/48‑51 (MQ=255) aTGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtg < 1:1674679‑M2/51‑3 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacattgttg < 1:8491235‑M2/6‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacattgttg > 1:8434245‑M2/46‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAAc < 1:2369900‑M2/9‑1 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:6437857‑M2/1‑44 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:10812145‑M2/1‑44 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTg < 1:9772706‑M2/11‑1 (MQ=255) gTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga < 1:8627149‑M2/51‑9 (MQ=255) tGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga > 1:8074970‑M2/1‑42 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt < 1:502952‑M2/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt < 1:2524145‑M2/13‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTc > 1:3080595‑M2/38‑51 (MQ=255) aCGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccc < 1:4428547‑M2/51‑12 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg < 1:10052844‑M2/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg > 1:288059‑M2/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg < 1:6039236‑M2/15‑1 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc > 1:4960474‑M2/1‑39 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt > 1:5870394‑M2/36‑51 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2836258‑M2/51‑14 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt > 1:214186‑M2/34‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt < 1:6685894‑M2/16‑1 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa < 1:678‑M2/51‑16 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga > 1:9095834‑M2/1‑36 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:5396305‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:1127326‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:6132263‑M2/1‑35 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:2960435‑M2/1‑34 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:2692237‑M2/1‑34 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag < 1:3519143‑M2/51‑19 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt < 1:5330294‑M2/51‑20 (MQ=255) catcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTa > 1:8597604‑M2/29‑51 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:3975478‑M2/1‑30 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:700303‑M2/1‑30 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg < 1:3457541‑M2/25‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg > 1:870007‑M2/27‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg < 1:710904‑M2/25‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg < 1:3335620‑M2/26‑1 (MQ=255) gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGtaggac > 1:5408898‑M2/25‑49 (MQ=255) gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGc > 1:6354726‑M2/25‑51 (MQ=255) gTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:10284161/1‑51 (MQ=255) ccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:3752562‑M2/23‑51 (MQ=255) caacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgc < 1:417974‑M2/30‑1 (MQ=255) aacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcc > 1:1287827‑M2/21‑51 (MQ=255) gTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagtta > 1:3904176‑M2/1‑22 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa > 1:9017689‑M2/1‑20 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa < 1:4740328‑M2/51‑32 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:4921063/1‑51 (MQ=255) aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:1006969‑M2/18‑51 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:5921422‑M2/1‑19 (MQ=255) aaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct < 1:8134724‑M2/35‑1 (MQ=255) ggAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacac < 1:9331905‑M2/51‑35 (MQ=255) gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa < 1:4086696‑M2/46‑31 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:5731531‑M2/39‑1 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:6754873‑M2/39‑1 (MQ=255) agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg > 1:5912632/1‑51 (MQ=255) ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc < 1:6476915‑M2/40‑1 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:7631828‑M2/1‑14 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:4863082‑M2/1‑14 (MQ=255) gtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCa < 1:1105861‑M2/41‑1 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg > 1:6942108‑M2/1‑13 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:6234241‑M2/51‑39 (MQ=255) tgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCaa < 1:8235643‑M2/42‑1 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:6650978‑M2/1‑12 (MQ=255) aaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggca < 1:7734101‑M2/51‑41 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:7056622‑M2/44‑1 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:1810576‑M2/44‑1 (MQ=255) gCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcata < 1:5097525‑M2/51‑43 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc > 1:9294243‑M2/7‑50 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:5474161‑M2/7‑51 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg < 1:3201310‑M2/45‑1 (MQ=255) gtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGt > 1:10761447‑M2/6‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGTTGCCTGCTGCCGCAAGCGTg > 1:5802353‑M2/5‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg < 1:4508527‑M2/47‑1 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1501661‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1723281‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4296382‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:9637156‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:9411604‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4676139‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:5657244‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:4204235‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:9854778‑M2/1‑7 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:10915368‑M2/51‑46 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:10637108‑M2/1‑6 (MQ=255) acaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGa > 1:9625978‑M2/4‑51 (MQ=255) gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg < 1:7336740‑M2/51‑47 (MQ=255) gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:7205080‑M2/1‑5 (MQ=255) tttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:2482721‑M2/51‑48 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:9192172/1‑51 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:1787245/1‑51 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:2762601/1‑51 (MQ=255) | GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA > REL606/4415660‑4415760 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |