Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 4,415,710 IS150 (–) +3 bp 94.5% coding (848‑850/1413 nt) cycA → D‑alanine/D‑serine/glycine transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3893554 =NA (NA)94 (0.990) 55/80 NT 93.5% noncoding (1/1443 nt) IS150 repeat region
?REL606 4415710 = 6 (0.070)coding (848/1413 nt) cycA D‑alanine/D‑serine/glycine transporter
* ? REL606 = 3894996NA (NA)111 (1.200) 53/78 NT 94.5% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 4415712 6 (0.070)coding (850/1413 nt) cycA D‑alanine/D‑serine/glycine transporter

Only 100 of 269 total aligned reads displayed.

GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA  >  REL606/4415660‑4415760
                                                  |                                                  
 aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                                   <  1:2038806/51‑1 (MQ=255)
 aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt                                                   <  1:1480966/51‑1 (MQ=255)
  tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg                                                  >  1:1012812‑M2/49‑51 (MQ=255)
  tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg                                                  <  1:1872996‑M2/3‑1 (MQ=255)
  tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg                                                  <  1:7981828‑M2/3‑1 (MQ=255)
  tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg                                                  <  1:8399511‑M2/3‑1 (MQ=255)
   attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt                                                 <  1:10855270‑M2/4‑1 (MQ=255)
   attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt                                                 >  1:8474275‑M2/48‑51 (MQ=255)
   attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt                                                 >  1:7657030‑M2/48‑51 (MQ=255)
    aTGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtg                                                <  1:1674679‑M2/51‑3 (MQ=255)
     taggggctattccatttcatcgtccaacaaaatgggtgcagtacattgttg                                               <  1:8491235‑M2/6‑1 (MQ=255)
     taggggctattccatttcatcgtccaacaaaatgggtgcagtacattgttg                                               >  1:8434245‑M2/46‑51 (MQ=255)
        gggctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAAc                                            <  1:2369900‑M2/9‑1 (MQ=255)
         cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg                                           >  1:6437857‑M2/1‑44 (MQ=255)
         cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg                                           >  1:10812145‑M2/1‑44 (MQ=255)
          gctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTg                                          <  1:9772706‑M2/11‑1 (MQ=255)
          gTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga                                          <  1:8627149‑M2/51‑9 (MQ=255)
           tGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga                                          >  1:8074970‑M2/1‑42 (MQ=255)
            tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt                                        <  1:502952‑M2/13‑1 (MQ=255)
            tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt                                        <  1:2524145‑M2/13‑1 (MQ=255)
             attccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTc                                       >  1:3080595‑M2/38‑51 (MQ=255)
             aCGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccc                                       <  1:4428547‑M2/51‑12 (MQ=255)
              ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg                                      <  1:10052844‑M2/15‑1 (MQ=255)
              ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg                                      >  1:288059‑M2/37‑51 (MQ=255)
              ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg                                      <  1:6039236‑M2/15‑1 (MQ=255)
              cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc                                      >  1:4960474‑M2/1‑39 (MQ=255)
               tccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt                                     >  1:5870394‑M2/36‑51 (MQ=255)
               gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca                                     <  1:2836258‑M2/51‑14 (MQ=255)
                 catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt                                   >  1:214186‑M2/34‑51 (MQ=255)
                 catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt                                     <  1:6685894‑M2/16‑1 (MQ=255)
                 cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa                                   <  1:678‑M2/51‑16 (MQ=255)
                 cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactga                                          >  1:9095834‑M2/1‑36 (MQ=255)
                  gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa                                  >  1:5396305‑M2/1‑35 (MQ=255)
                  gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa                                  >  1:1127326‑M2/1‑35 (MQ=255)
                  gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa                                  >  1:6132263‑M2/1‑35 (MQ=255)
                   tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa                                 >  1:2960435‑M2/1‑34 (MQ=255)
                   tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa                                 >  1:2692237‑M2/1‑34 (MQ=255)
                    ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag                                <  1:3519143‑M2/51‑19 (MQ=255)
                     gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt                               <  1:5330294‑M2/51‑20 (MQ=255)
                      catcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTa                              >  1:8597604‑M2/29‑51 (MQ=255)
                       gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg                             >  1:3975478‑M2/1‑30 (MQ=255)
                       gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg                             >  1:700303‑M2/1‑30 (MQ=255)
                        tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg                            <  1:3457541‑M2/25‑1 (MQ=255)
                        tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg                            >  1:870007‑M2/27‑51 (MQ=255)
                        tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg                            <  1:710904‑M2/25‑1 (MQ=255)
                         cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg                           <  1:3335620‑M2/26‑1 (MQ=255)
                          gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGtaggac                          >  1:5408898‑M2/25‑49 (MQ=255)
                          gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGc                          >  1:6354726‑M2/25‑51 (MQ=255)
                            gTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctg                        >  1:10284161/1‑51 (MQ=255)
                            ccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctg                        >  1:3752562‑M2/23‑51 (MQ=255)
                             caacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgc                       <  1:417974‑M2/30‑1 (MQ=255)
                              aacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcc                      >  1:1287827‑M2/21‑51 (MQ=255)
                               gTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagtta                     >  1:3904176‑M2/1‑22 (MQ=255)
                                 cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa                   >  1:9017689‑M2/1‑20 (MQ=255)
                                 cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa                   <  1:4740328‑M2/51‑32 (MQ=255)
                                 cccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc                   >  1:4921063/1‑51 (MQ=255)
                                 aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc                   >  1:1006969‑M2/18‑51 (MQ=255)
                                  ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa                                 >  1:5921422‑M2/1‑19 (MQ=255)
                                  aaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct                  <  1:8134724‑M2/35‑1 (MQ=255)
                                    ggAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacac                <  1:9331905‑M2/51‑35 (MQ=255)
                                     gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa                    <  1:4086696‑M2/46‑31 (MQ=255)
                                      gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg              <  1:5731531‑M2/39‑1 (MQ=255)
                                      gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg              <  1:6754873‑M2/39‑1 (MQ=255)
                                      agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg              >  1:5912632/1‑51 (MQ=255)
                                       ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc             <  1:6476915‑M2/40‑1 (MQ=255)
                                       gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag             >  1:7631828‑M2/1‑14 (MQ=255)
                                       gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag             >  1:4863082‑M2/1‑14 (MQ=255)
                                        gtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCa            <  1:1105861‑M2/41‑1 (MQ=255)
                                        aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg            >  1:6942108‑M2/1‑13 (MQ=255)
                                        aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg            <  1:6234241‑M2/51‑39 (MQ=255)
                                         tgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCaa           <  1:8235643‑M2/42‑1 (MQ=255)
                                         aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc           >  1:6650978‑M2/1‑12 (MQ=255)
                                          aaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggca          <  1:7734101‑M2/51‑41 (MQ=255)
                                           cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc         <  1:7056622‑M2/44‑1 (MQ=255)
                                           cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc         <  1:1810576‑M2/44‑1 (MQ=255)
                                            gCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcata        <  1:5097525‑M2/51‑43 (MQ=255)
                                            agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc         >  1:9294243‑M2/7‑50 (MQ=255)
                                            agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg        >  1:5474161‑M2/7‑51 (MQ=255)
                                            agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg        <  1:3201310‑M2/45‑1 (MQ=255)
                                             gtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGt       >  1:10761447‑M2/6‑51 (MQ=255)
                                              tacaTTGTTGAACTGTTCGTGTTGGTAGGGTTGCCTGCTGCCGCAAGCGTg      >  1:5802353‑M2/5‑51 (MQ=255)
                                              tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg      <  1:4508527‑M2/47‑1 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:1501661‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:1723281‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:4296382‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:9637156‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      <  1:9411604‑M2/51‑45 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:4676139‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:5657244‑M2/1‑7 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      <  1:4204235‑M2/51‑45 (MQ=255)
                                              ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata      >  1:9854778‑M2/1‑7 (MQ=255)
                                               cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag     <  1:10915368‑M2/51‑46 (MQ=255)
                                               cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag     >  1:10637108‑M2/1‑6 (MQ=255)
                                               acaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGa     >  1:9625978‑M2/4‑51 (MQ=255)
                                                gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg    <  1:7336740‑M2/51‑47 (MQ=255)
                                                gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg    >  1:7205080‑M2/1‑5 (MQ=255)
                                                 tttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt   <  1:2482721‑M2/51‑48 (MQ=255)
                                                  ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa  >  1:9192172/1‑51 (MQ=255)
                                                  ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa  >  1:1787245/1‑51 (MQ=255)
                                                  ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa  >  1:2762601/1‑51 (MQ=255)
                                                  |                                                  
GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA  >  REL606/4415660‑4415760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.