Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 30 [0] | [0] 36 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 21 (0.790) | 18/276 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 30 (1.140) | 21/274 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
GACACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGC > REL606/2775729‑2776018 | gcacccacagcGTGCCGTGATGATCCCGCAACCATCATCAGTTGTGAAGTAGTGTTTCACCTCTTCACGTCCCTTTTCAAACGGTTATTTTGGCTTTGACTTATTAGGGGCTATTCCTTTTCATCGTCCCACCAAATGGGTGCAGTACac < 1:602928/140‑2 (MQ=1) gTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAat > 1:662966/1‑150 (MQ=18) gatgatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCt > 2:158673/1‑150 (MQ=255) atCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCTCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTgggg < 1:463943/150‑1 (MQ=255) tCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGc > 2:131540/1‑150 (MQ=255) tCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGc > 2:43508/1‑150 (MQ=255) gTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCtttt > 1:140504/1‑150 (MQ=255) ataaacataaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTc < 1:289384/145‑1 (MQ=255) aCCGTCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTc < 1:532769/150‑1 (MQ=255) ccATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTcc > 1:441846/1‑150 (MQ=255) gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc < 2:85598/150‑1 (MQ=255) gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc < 2:140907/150‑1 (MQ=255) gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCGTTTCAAAAGGGTATTTTGGCTTTGACATATTAGTGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc < 1:489075/150‑1 (MQ=255) aCGACTTCAATGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGTGTATTCCATTGCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGGCCATCTGGAACCTCGCGAATGCTTAgcgc < 1:516324/150‑1 (MQ=21) ttttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGc < 2:664926/150‑1 (MQ=255) cAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCAccc < 2:443096/150‑1 (MQ=255) tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtat < 1:131161/150‑1 (MQ=255) ataagagacagtatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtat < 1:334558/139‑1 (MQ=38) gCTTTTACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc < 1:43370/150‑1 (MQ=255) gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc < 2:51737/150‑1 (MQ=255) gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc < 1:158228/150‑1 (MQ=255) gACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGAt < 2:159733/150‑1 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtatctgtctcttat > 2:335510/1‑139 (MQ=38) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAAtt > 2:67183/1‑150 (MQ=255) gggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCa > 2:673664/1‑150 (MQ=255) tGGGTGTAGTAC‑TGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGTAACCTCGCTAATGAGTAACGCCAGACAGCCTCAAGCACCCGACGGCATTTTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATAc < 1:264980/150‑1 (MQ=255) ggTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTg < 1:66985/150‑1 (MQ=255) gTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGc > 2:604375/1‑150 (MQ=255) | GACACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGC > REL606/2775729‑2776018 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |