| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 30 [0] | [0] 36 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 21 (0.790) | 18/276 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 30 (1.140) | 21/274 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
ACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGAATACGAAAC > REL606/2397397‑2397691 | accaaaacgtgccgagatgatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat > 2:257643‑M1/147‑150 (MQ=255) ccaaaacgtgccgagatgatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATg < 2:596978‑M1/5‑1 (MQ=255) aaaacgtgccgagatgatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGAc > 1:595224‑M1/144‑150 (MQ=255) tcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc < 1:350801‑M1/24‑1 (MQ=255) cctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcc > 2:488925‑M1/126‑150 (MQ=255) cctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcc > 2:380326‑M1/126‑150 (MQ=255) cctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaaaggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcc > 1:113070‑M1/126‑150 (MQ=255) ctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct < 2:589127‑M1/26‑1 (MQ=255) accatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCg > 2:180507‑M1/120‑150 (MQ=255) catcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa > 2:654244‑M1/115‑150 (MQ=255) cagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGt > 2:453480‑M1/112‑150 (MQ=255) gttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTAt < 1:530126‑M1/41‑1 (MQ=255) gttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTAt < 2:390550‑M1/41‑1 (MQ=255) gtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc > 2:65261‑M1/107‑150 (MQ=255) gtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc > 2:239581‑M1/107‑150 (MQ=255) gaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 1:434154‑M1/105‑150 (MQ=255) gaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 2:83282‑M1/105‑150 (MQ=255) gaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctctgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 2:396246‑M1/105‑150 (MQ=255) acttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATg > 2:531663‑M1/89‑150 (MQ=255) gcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTc > 2:168734‑M1/81‑150 (MQ=255) agggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGGGCTGATGTCATATTCCTGCACCTGGcc < 1:584771‑M1/82‑1 (MQ=255) ttgtttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtaaaTCATGACTTTATAACGAACCTGGACTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttc > 1:311735‑M1/65‑150 (MQ=255) tattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttc > 2:586489‑M1/65‑150 (MQ=255) ttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCaa > 2:351807‑M1/55‑150 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGaa < 2:9977‑M1/102‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGaa < 2:422994‑M1/102‑1 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCa < 2:417415‑M1/108‑1 (MQ=255) acaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAAATGGAatcaaca < 2:156310‑M1/131‑4 (MQ=255) aatgggtgcagtacaTCCTGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGATGCGGTGCTGATTTGATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGATATGGAATCACCAAGAt > 1:155868‑M1/16‑150 (MQ=255) gtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAGGGCATATTCACGCACCTGGCCGTTCTGTTCTTCAATGCGAACCTGCCACGTACCGGAGCTGGAATCACCAAGATCCTGa < 1:211084‑M1/140‑1 (MQ=255) gtgcagtacaTCACGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGa < 2:55284‑M1/140‑1 (MQ=255) tgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCTGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGaa > 1:587395‑M1/10‑150 (MQ=255) cagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGAATa < 2:5724‑M1/143‑1 (MQ=255) gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTTAGGTATTGCATCGAGGCGGTGCTGCTGTCATATTTCTGCACCTGGCCGTTCTGTTCTTCACTGCGAACCTGCAACGTACCGGAGATGAAATCACCAAGATCGTGAATACg < 1:629366‑M1/145‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGAATACGaaa < 2:119251‑M1/148‑1 (MQ=255) aTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGAATACGAAAc > 1:118903‑M1/2‑150 (MQ=255) | ACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAAGATCCTGAATACGAAAC > REL606/2397397‑2397691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |