Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 30 [0] | [0] 36 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 21 (0.790) | 18/276 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 30 (1.140) | 21/274 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
ACGAGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTC > REL606/2774287‑2774580 | aCGAGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg < 1:146570/150‑1 (MQ=255) aGTCGCCTACCATCAGCGTGAATCCCAGTACTGTTAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc < 1:158296/150‑1 (MQ=255) aGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc < 2:681878/150‑1 (MQ=255) aGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc < 2:649707/150‑1 (MQ=255) aGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc < 2:62442/150‑1 (MQ=255) aGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc < 2:254949/150‑1 (MQ=255) ccTACCATCAGCGTGAATCCCAGTCCTGTAATACACATCACTAAGATTGCCACAAGGGCATATTTTGTCATCATGCCTTCCCTCCCTGCATAGATGAAACTAACATTCGACTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc > 1:56849/1‑150 (MQ=255) ccTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc > 2:424933/1‑150 (MQ=255) ccTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc > 2:214067/1‑150 (MQ=255) ccTACCATAAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCAAAAGGGCATATTTTGTGAGCATGTCTTGCCTCCGTGCAATGAAGAGACTAACATTCGAATTGTTGGGGTTCGAACGTAAGCCTCAGGTTGTACTCAcc > 1:168968/1‑150 (MQ=255) gCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt > 2:189921/1‑150 (MQ=255) agagacaggTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc < 1:197216/142‑1 (MQ=255) tCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt > 2:264378/1‑150 (MQ=255) tCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt > 1:365692/1‑150 (MQ=255) tCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt > 1:455812/1‑150 (MQ=255) tCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt > 1:101186/1‑150 (MQ=255) tCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt > 2:39626/1‑150 (MQ=255) gTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAcctgtctct > 2:197788/1‑142 (MQ=255) aCTGTAAAACACAGCACTATGATTGCCACAAGGGTATATCTTTTCCGCATGTCTTGCCTCCCTGCATAGAAGAGACTAACATTCGAATTTTTCGGGTACGAACGTAAACCTCAGGTTGTACTGACCCCATAGAGTTGGACAGTTaactac > 1:523503/1‑146 (MQ=255) gaaaaaCACAGCACTATGATTGCCACAATGTCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGCGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGat > 1:289224/3‑149 (MQ=255) gTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATATCTTGCCTCCCTGCAAAGAAGAGAATAACATTCGAATTGTGTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg > 1:212368/1‑150 (MQ=255) acaGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGCGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAtata < 1:423727/150‑1 (MQ=255) agaaCTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg < 1:213306/147‑1 (MQ=255) aGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg < 1:39505/150‑1 (MQ=255) aGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg < 1:272779/150‑1 (MQ=255) gCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGTCATATAGGt > 1:421702/1‑150 (MQ=255) gCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt > 2:573391/1‑150 (MQ=255) gCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt > 2:644025/1‑150 (MQ=255) cACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTc < 1:213454/150‑1 (MQ=255) cACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTc < 2:457107/150‑1 (MQ=255) cACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTc < 1:642139/150‑1 (MQ=255) tCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGAcc < 2:551989/150‑1 (MQ=255) tGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTaa > 2:449311/1‑150 (MQ=255) gTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAAt > 2:432934/1‑150 (MQ=255) tCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACATTTTAAtt > 1:626239/1‑150 (MQ=255) gCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAAttc < 1:385926/150‑1 (MQ=255) gCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAAttc > 2:387052/1‑150 (MQ=255) aagaGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGGCCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTctgc < 2:212979/150‑1 (MQ=255) aagaGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGATGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTctgc < 2:433038/150‑1 (MQ=255) gagaCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCTATATTCAATTGGAGTCAGACCTCTTAATTTCAGGCTAATTCTTctgctg > 1:448933/1‑150 (MQ=255) cATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTgtagta < 1:189379/150‑1 (MQ=255) aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTAt < 2:619463/150‑1 (MQ=255) ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACTGTTAAAGACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAatat < 2:169448/150‑1 (MQ=255) gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAatatat > 1:310378/1‑150 (MQ=255) ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTc < 2:366752/150‑1 (MQ=255) gcagtacAGATTGAACTTACCCCAGAACGTTAGACAGTTAAAAATGAGGCATATAGGACTGATTCCGATACTCAACTGGAGTCAGACCTTATATTCTCAGGGTAATTCTTCTGCTGTTGTAGTATTTAATATATCCCAGAACATCATCCt > 1:504026/7‑150 (MQ=2) gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTc > 1:547266/1‑150 (MQ=35) gCCTCAGGTTGTACTGACCCCAAAAACTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTc < 1:448037/150‑1 (MQ=21) cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGtt > 1:553839/1‑150 (MQ=32) aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGGGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTc > 1:103144/1‑150 (MQ=17) | ACGAGTCGCCTACCATCAGCGTGAATCCCAGTACTGTAAAACACAGCACTATGATTGCCACAAGGGCATATTTTGTCAGCATGTCTTGCCTCCCTGCAAAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTC > REL606/2774287‑2774580 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |