| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 30 [0] | [0] 36 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 21 (0.790) | 18/276 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 30 (1.140) | 21/274 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
TAGACAAATCGCGACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAA > REL606/2397384‑2397674 | tcgacCAATCGCGACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtac < 1:512534‑M1/148‑6 (MQ=255)tAGACAAATCGCGACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtac < 2:670564‑M1/150‑6 (MQ=255) aaaTCGCGACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgacc < 2:74669‑M1/150‑11 (MQ=255) gCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacac < 2:359365‑M1/150‑35 (MQ=255) gACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgag > 2:109458‑M1/1‑113 (MQ=255) tttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 2:209598‑M1/150‑49 (MQ=255) tttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 2:305112‑M1/150‑49 (MQ=255) ccgccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaa > 2:387456‑M1/1‑86 (MQ=255) gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCGCACTCtgtactgacccaaaaaagttggacagttaaacacgaggcatataggtctgatcccgatattcaatt > 1:472899‑M1/1‑84 (MQ=255) gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaatt > 1:484283‑M1/1‑84 (MQ=255) ccGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta > 2:268382‑M1/1‑68 (MQ=255) tCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattgtagtcagaccttttaatttcaggct > 1:51445‑M1/1‑58 (MQ=255) gCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgc < 2:474243‑M1/150‑104 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgct < 2:485659‑M1/150‑105 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgct > 1:373962‑M1/1‑46 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgct > 1:367394‑M1/1‑46 (MQ=255) aCCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtag < 1:109136‑M1/150‑112 (MQ=255) cAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagta < 2:337477‑M1/150‑114 (MQ=255) aaaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaat < 1:267621‑M1/150‑120 (MQ=255) aagagacaggacatggtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatat < 1:567343‑M1/141‑124 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaac < 1:386329‑M1/150‑132 (MQ=255) gACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatatctgtctctt > 2:569000‑M1/1‑18 (MQ=255) ggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatcctt > 1:60858‑M1/1‑10 (MQ=255) gacagactctgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttc < 2:570440‑M1/145‑142 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcctgtc > 1:568779‑M1/1‑4 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:544103‑M1/1‑4 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:25637‑M1/1‑4 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:176747‑M1/1‑4 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:233308‑M1/1‑4 (MQ=255) aCTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:229215‑M1/1‑4 (MQ=255) | TAGACAAATCGCGACCGATGCCAAGTGCCGCAGACTGATAGTTTTTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGAACATGCAACGTACCGGAGATGGAATCACCAA > REL606/2397384‑2397674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |