BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	3,289,962	Δ16 bp	coding (96‑111/4554 nt)	gltB	glutamate synthase, large subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3289962	3289977	16	49 [0]	[0] 49	gltB	glutamate synthase, large subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 3289961	0 (0.000)	48 (0.880)	34/70	0.2	coding (95/4554 nt)	gltB	glutamate synthase, large subunit
*	?	REL606	3289978 =	0 (0.000)	48 (0.880)	34/70	0.2	coding (112/4554 nt)	gltB	glutamate synthase, large subunit


TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCC  >  REL606/3289943‑3290013


gggttcccgcagagcctgggggaggttcacgatatc                                     <  1:4136029‑M2/1‑1 (MQ=255)


gggttcccgcagagcctgagggaggttcacgatatc                                     >  1:5136776‑M2/36‑36 (MQ=255)


  gttcccgcagagcctgggggaggttcacgatatCtt                                   >  1:3327311‑M2/34‑36 (MQ=255)


     cccgcagagcctgggggaggttcacgatatCTTgag                                <  1:321637‑M2/6‑1 (MQ=255)


      ccgcagagcctgggggaggttcacgatatCTTgaga                               <  1:1435538‑M2/7‑1 (MQ=255)


      ccgcagagcctgggggaggttcacgatatCTTgaga                               >  1:728798‑M2/30‑36 (MQ=255)


      ccgcagagcctgggggaggttcacgatatCTTgaga                               <  1:2435189‑M2/7‑1 (MQ=255)


      ccgcagagcctgggggaggttcacgatatCTTgaga                               >  1:2519051‑M2/30‑36 (MQ=255)


       cgcagagcctgggggaggttcacgatatCTTGagag                              >  1:5330195‑M2/29‑36 (MQ=255)


       cgcagagcctgggggaggttcacgatatCTTGagag                              >  1:4473088‑M2/29‑36 (MQ=255)


        gcagagcctgggggaggttcacgatatCTTGAGAgg                             >  1:2113304‑M2/28‑36 (MQ=255)


        gcagagcctgggggaggttcacgatatCTTGAGAgg                             >  1:4912198‑M2/28‑36 (MQ=255)


         cagagcctgggggaggttcacgatatCTTGAGAggg                            >  1:7224075‑M2/27‑36 (MQ=255)


         cagagcctgggggaggttcacgatatCTTGAGAggg                            >  1:5472267‑M2/27‑36 (MQ=255)


            agcctgggggaggttcacgatatCTTGAGAGGGATa                         >  1:7100640‑M2/24‑36 (MQ=255)


              cctgggggaggttcacgatatCTTGAGAGGTATAAc                       >  1:2719396‑M2/22‑36 (MQ=255)


              cctgggggaggttcacgatatCTTGAGAGGGATAAc                       <  1:4509504‑M2/15‑1 (MQ=255)


              cctgggggaggttcacgatatCTTGAGAGGGATAAc                       <  1:2617914‑M2/15‑1 (MQ=255)


               ctggggggggttcacgatatCTTGAGAGGGATAACt                      <  1:6565020‑M2/16‑1 (MQ=255)


               ctgggggaggttcacgatatCTTGAGAGGGTTAACt                      >  1:3928093‑M2/21‑36 (MQ=255)


               ctgggggaggttcacgatatCTTGAGAGGGATAACt                      >  1:3070297‑M2/21‑36 (MQ=255)


                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    >  1:925597‑M2/19‑36 (MQ=255)


                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    >  1:1583709‑M2/19‑36 (MQ=255)


                 gggggaggttcacgatatCTTGAGAGGGATAACtgt                    <  1:1678757‑M2/18‑1 (MQ=255)


                  ggggaggttcacgatatCTTGAGAGGGATAACtgtg                   >  1:3231936‑M2/18‑36 (MQ=255)


                   gggaggttcacgatatCTTGAGAGGGATAACTGTgg                  >  1:7267416‑M2/17‑36 (MQ=255)


                   gggaggttcacgatatCTTGAGAGGGATAACTGTgg                  <  1:4806166‑M2/20‑1 (MQ=255)


                    ggaggttcacgatatCTTGAGAGGGATAACTGTGGt                 <  1:500979‑M2/21‑1 (MQ=255)


                    ggaggttcacgatatCTTGAGAGGGATAACTGTGGt                 <  1:6348773‑M2/21‑1 (MQ=255)


                     gaggttcacgatatCTTGAGAGGGATAACTGTGGtt                <  1:3537557‑M2/22‑1 (MQ=255)


                     gaggttcacgatatCTTGAGAGGGATAACTGTGGtt                >  1:4975305‑M2/15‑36 (MQ=255)


                     gaggttcacgatatCTTGAGAGGGATAACTGTGGtt                <  1:6287136‑M2/22‑1 (MQ=255)


                     gagattcacgatatCTTGAGAGGGATAACTGTGGtt                <  1:4049854‑M2/22‑1 (MQ=255)


                      aggttcacgatatCTTGAGAGGGATAACTGTGGttt               >  1:280225‑M2/14‑36 (MQ=255)


                      aggttcacgatatCTTGAGAGGGATAACTGTGGttt               <  1:2623833‑M2/23‑1 (MQ=255)


                      aggttcacgatatCTTGAGAGGGATAACTGTGGttt               <  1:5674725‑M2/23‑1 (MQ=255)


                       ggttcacgatatCTTGAGAGGGATAACTGTGGTTTc              <  1:4707617‑M2/24‑1 (MQ=255)


                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg             <  1:1818014‑M2/25‑1 (MQ=255)


                        gttcacgatatCTTGAGAGGGATAACTGTGGTTTCg             >  1:3566879‑M2/12‑36 (MQ=255)


                          tcacgatatCTTGAGAGGGATAACTGTGGTTTCGGc           <  1:6843675‑M2/27‑1 (MQ=255)


                           cacgatatCTTGAGAGGGATAACTGTGGTTTTGGcc          >  1:2533717‑M2/9‑36 (MQ=255)


                             cgatatCTTGAGAGGGATAACTGTGGTTTCGGCctt        >  1:2887498‑M2/7‑35 (MQ=255)


                             cgatatCTTGAGAGGGATAACTGTGGTTTCGGCCTg        >  1:5849235‑M2/7‑36 (MQ=255)


                             cgatatCTTGAGAGGGATAACTGTGGTTTCGGCCTg        <  1:7070671‑M2/30‑1 (MQ=255)


                             cgatatCTTGAGAGGGATAACTGTGGTTTCGGCCTg        >  1:1604243‑M2/7‑36 (MQ=255)


                                 atCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCg    <  1:3025852‑M2/34‑1 (MQ=255)


                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGTTCGc   >  1:2174694‑M2/2‑36 (MQ=255)


                                  tCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGc   <  1:7461580‑M2/35‑1 (MQ=255)


                                   cTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGcc  <  1:2605912/36‑1 (MQ=255)


TGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGCC  >  REL606/3289943‑3290013

Base quality scores:


ATCG

< 3 ≤


ATCG

< 11 ≤


ATCG

< 20 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG