BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	3,289,962	Δ16 bp	coding (96‑111/4554 nt)	gltB	glutamate synthase, large subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3289962	3289977	16	49 [0]	[0] 49	gltB	glutamate synthase, large subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 3289961	0 (0.000)	48 (0.880)	34/70	0.2	coding (95/4554 nt)	gltB	glutamate synthase, large subunit
*	?	REL606	3289978 =	0 (0.000)	48 (0.880)	34/70	0.2	coding (112/4554 nt)	gltB	glutamate synthase, large subunit


GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961


...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012


GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATC                                    <  1:4136029/36‑1 (MQ=255)


GGGTTCCCGCAGAGCCTGAGGGAGGTTCACGATATC                                    >  1:5136776/1‑36 (MQ=255)


  GTTCCCGCAGAGCCTGGGGGAGGTTCACGATATCTT                                  >  1:3327311/1‑36 (MQ=255)


     CCCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAG                               <  1:321637/36‑1 (MQ=255)


      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              >  1:728798/1‑36 (MQ=255)


      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              >  1:2519051/1‑36 (MQ=255)


      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              <  1:2435189/36‑1 (MQ=255)


      CCGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGA                              <  1:1435538/36‑1 (MQ=255)


       CGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAG                             >  1:5330195/1‑36 (MQ=255)


       CGCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAG                             >  1:4473088/1‑36 (MQ=255)


        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            >  1:2113304/1‑36 (MQ=255)


        GCAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGG                            >  1:4912198/1‑36 (MQ=255)


         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           >  1:5472267/1‑36 (MQ=255)


         CAGAGCCTGGGGGAGGTTCACGATATCTTGAGAGGG                           >  1:7224075/1‑36 (MQ=255)


            AGCCTGGGGGAGGTTCACGATATCTTGAGAGGGATA                        >  1:7100640/1‑36 (MQ=255)


              CCTGGGGGAGGTTCACGATATCTTGAGAGGTATAAC                      >  1:2719396/1‑36 (MQ=255)


              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:2617914/36‑1 (MQ=255)


              CCTGGGGGAGGTTCACGATATCTTGAGAGGGATAAC                      <  1:4509504/36‑1 (MQ=255)


               CTGGGGGGGGTTCACGATATCTTGAGAGGGATAACT                     <  1:6565020/36‑1 (MQ=255)


               CTGGGGGAGGTTCACGATATCTTGAGAGGGTTAACT                     >  1:3928093/1‑36 (MQ=255)


               CTGGGGGAGGTTCACGATATCTTGAGAGGGATAACT                     >  1:3070297/1‑36 (MQ=255)


                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   >  1:1583709/1‑36 (MQ=255)


                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   <  1:1678757/36‑1 (MQ=255)


                 GGGGGAGGTTCACGATATCTTGAGAGGGATAACTGT                   >  1:925597/1‑36 (MQ=255)


                  GGGGAGGTTCACGATATCTTGAGAGGGATAACTGTG                  >  1:3231936/1‑36 (MQ=255)


                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 <  1:4806166/36‑1 (MQ=255)


                   GGGAGGTTCACGATATCTTGAGAGGGATAACTGTGG                 >  1:7267416/1‑36 (MQ=255)


                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                <  1:6348773/36‑1 (MQ=255)


                    GGAGGTTCACGATATCTTGAGAGGGATAACTGTGGT                <  1:500979/36‑1 (MQ=255)


                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               <  1:3537557/36‑1 (MQ=255)


                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               <  1:6287136/36‑1 (MQ=255)


                     GAGGTTCACGATATCTTGAGAGGGATAACTGTGGTT               >  1:4975305/1‑36 (MQ=255)


                     GAGATTCACGATATCTTGAGAGGGATAACTGTGGTT               <  1:4049854/36‑1 (MQ=255)


                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              >  1:280225/1‑36 (MQ=255)


                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              <  1:2623833/36‑1 (MQ=255)


                      AGGTTCACGATATCTTGAGAGGGATAACTGTGGTTT              <  1:5674725/36‑1 (MQ=255)


                       GGTTCACGATATCTTGAGAGGGATAACTGTGGTTTC             <  1:4707617/36‑1 (MQ=255)


                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            >  1:3566879/1‑36 (MQ=255)


                        GTTCACGATATCTTGAGAGGGATAACTGTGGTTTCG            <  1:1818014/36‑1 (MQ=255)


                          TCACGATATCTTGAGAGGGATAACTGTGGTTTCGGC          <  1:6843675/36‑1 (MQ=255)


                           CACGATATCTTGAGAGGGATAACTGTGGTTTTGGCC         >  1:2533717/1‑36 (MQ=255)


                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTt       >  1:2887498/1‑35 (MQ=255)


                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       >  1:5849235/1‑36 (MQ=255)


                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       >  1:1604243/1‑36 (MQ=255)


                             CGATATCTTGAGAGGGATAACTGTGGTTTCGGCCTG       <  1:7070671/36‑1 (MQ=255)


                                 ATCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCG   <  1:3025852/36‑1 (MQ=255)


                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGTTCGC  >  1:2174694/1‑36 (MQ=255)


                                  TCTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  <  1:7461580/36‑1 (MQ=255)


GGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATAT...................................  >  REL606/3289927‑3289961


...................................CTTGAGAGGGATAACTGTGGTTTCGGCCTGATCGC  >  REL606/3289978‑3290012

Base quality scores:


ATCG

< 3 ≤


ATCG

< 11 ≤


ATCG

< 20 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG