BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	3,289,962	Δ16 bp	coding (96‑111/4554 nt)	gltB	glutamate synthase, large subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3289962	3289977	16	49 [0]	[0] 49	gltB	glutamate synthase, large subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 3289961	0 (0.000)	48 (0.880)	34/70	0.2	coding (95/4554 nt)	gltB	glutamate synthase, large subunit
*	?	REL606	3289978 =	0 (0.000)	48 (0.880)	34/70	0.2	coding (112/4554 nt)	gltB	glutamate synthase, large subunit


GGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTG  >  REL606/3289926‑3289996


ggggTTCCCGCAGAGCCTGGGGGAGGTTCACGatat                                     >  1:2609713/1‑36 (MQ=255)


 gggTTCCCGCAGAGCCTGGGGGAGGTTCACGATATc                                    <  1:4136029‑M1/36‑2 (MQ=255)


 gggTTCCCGCAGAGCCTGAGGGAGGTTCACGATATc                                    >  1:5136776‑M1/1‑35 (MQ=255)


   gTTCCCGCAGAGCCTGGGGGAGGTTCACGATATctt                                  >  1:3327311‑M1/1‑33 (MQ=255)


      cccGCAGAGCCTGGGGGAGGTTCACGATATcttgag                               <  1:321637‑M1/36‑7 (MQ=255)


       ccGCAGAGCCTGGGGGAGGTTCACGATATcttgaga                              >  1:2519051‑M1/1‑29 (MQ=255)


       ccGCAGAGCCTGGGGGAGGTTCACGATATcttgaga                              <  1:2435189‑M1/36‑8 (MQ=255)


       ccGCAGAGCCTGGGGGAGGTTCACGATATcttgaga                              >  1:728798‑M1/1‑29 (MQ=255)


       ccGCAGAGCCTGGGGGAGGTTCACGATATcttgaga                              <  1:1435538‑M1/36‑8 (MQ=255)


        cGCAGAGCCTGGGGGAGGTTCACGATATcttgagag                             >  1:4473088‑M1/1‑28 (MQ=255)


        cGCAGAGCCTGGGGGAGGTTCACGATATcttgagag                             >  1:5330195‑M1/1‑28 (MQ=255)


         gCAGAGCCTGGGGGAGGTTCACGATATcttgagagg                            >  1:2113304‑M1/1‑27 (MQ=255)


         gCAGAGCCTGGGGGAGGTTCACGATATcttgagagg                            >  1:4912198‑M1/1‑27 (MQ=255)


          cAGAGCCTGGGGGAGGTTCACGATATcttgagaggg                           >  1:5472267‑M1/1‑26 (MQ=255)


          cAGAGCCTGGGGGAGGTTCACGATATcttgagaggg                           >  1:7224075‑M1/1‑26 (MQ=255)


             agCCTGGGGGAGGTTCACGATATcttgagagggata                        >  1:7100640‑M1/1‑23 (MQ=255)


               ccTGGGGGAGGTTCACGATATcttgagaggtataac                      >  1:2719396‑M1/1‑21 (MQ=255)


               ccTGGGGGAGGTTCACGATATcttgagagggataac                      <  1:4509504‑M1/36‑16 (MQ=255)


               ccTGGGGGAGGTTCACGATATcttgagagggataac                      <  1:2617914‑M1/36‑16 (MQ=255)


                cTGGGGGGGGTTCACGATATcttgagagggataact                     <  1:6565020‑M1/36‑17 (MQ=255)


                cTGGGGGAGGTTCACGATATcttgagagggttaact                     >  1:3928093‑M1/1‑20 (MQ=255)


                cTGGGGGAGGTTCACGATATcttgagagggataact                     >  1:3070297‑M1/1‑20 (MQ=255)


                  gggggAGGTTCACGATATcttgagagggataactgt                   >  1:925597‑M1/1‑18 (MQ=255)


                  gggggAGGTTCACGATATcttgagagggataactgt                   >  1:1583709‑M1/1‑18 (MQ=255)


                  gggggAGGTTCACGATATcttgagagggataactgt                   <  1:1678757‑M1/36‑19 (MQ=255)


                   ggggAGGTTCACGATATcttgagagggataactgtg                  >  1:3231936‑M1/1‑17 (MQ=255)


                    gggAGGTTCACGATATcttgagagggataactgtgg                 >  1:7267416‑M1/1‑16 (MQ=255)


                    gggAGGTTCACGATATcttgagagggataactgtgg                 <  1:4806166‑M1/36‑21 (MQ=255)


                     ggAGGTTCACGATATcttgagagggataactgtggt                <  1:6348773‑M1/36‑22 (MQ=255)


                     ggAGGTTCACGATATcttgagagggataactgtggt                <  1:500979‑M1/36‑22 (MQ=255)


                      gAGGTTCACGATATcttgagagggataactgtggtt               <  1:3537557‑M1/36‑23 (MQ=255)


                      gAGGTTCACGATATcttgagagggataactgtggtt               >  1:4975305‑M1/1‑14 (MQ=255)


                      gAGGTTCACGATATcttgagagggataactgtggtt               <  1:6287136‑M1/36‑23 (MQ=255)


                      gAGATTCACGATATcttgagagggataactgtggtt               <  1:4049854‑M1/36‑23 (MQ=255)


                       aGGTTCACGATATcttgagagggataactgtggttt              <  1:5674725‑M1/36‑24 (MQ=255)


                       aGGTTCACGATATcttgagagggataactgtggttt              <  1:2623833‑M1/36‑24 (MQ=255)


                       aGGTTCACGATATcttgagagggataactgtggttt              >  1:280225‑M1/1‑13 (MQ=255)


                        ggTTCACGATATcttgagagggataactgtggtttc             <  1:4707617‑M1/36‑25 (MQ=255)


                         gTTCACGATATcttgagagggataactgtggtttcg            <  1:1818014‑M1/36‑26 (MQ=255)


                         gTTCACGATATcttgagagggataactgtggtttcg            >  1:3566879‑M1/1‑11 (MQ=255)


                           tCACGATATcttgagagggataactgtggtttcggc          <  1:6843675‑M1/36‑28 (MQ=255)


                            cACGATATcttgagagggataactgtggttttggcc         >  1:2533717‑M1/1‑8 (MQ=255)


                              cGATATcttgagagggataactgtggtttcggcctt       >  1:2887498‑M1/1‑6 (MQ=255)


                              cGATATcttgagagggataactgtggtttcggcctg       >  1:5849235‑M1/1‑6 (MQ=255)


                              cGATATcttgagagggataactgtggtttcggcctg       <  1:7070671‑M1/36‑31 (MQ=255)


                              cGATATcttgagagggataactgtggtttcggcctg       >  1:1604243‑M1/1‑6 (MQ=255)


                                  atcttgagagggataactgtggtttcggcctgatcg   <  1:3025852‑M1/36‑35 (MQ=255)


                                   tcttgagagggataactgtggtttcggcctgttcgc  >  1:2174694‑M1/1‑1 (MQ=255)


                                   tcttgagagggataactgtggtttcggcctgatcgc  <  1:7461580‑M1/36‑36 (MQ=255)


GGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATATGTTGTACGATAAATCCCTTGAGAGGGATAACTGTG  >  REL606/3289926‑3289996

Base quality scores:


ATCG

< 3 ≤


ATCG

< 11 ≤


ATCG

< 20 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG