| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893578–3894995 | 3901930 | 6936–8353 | 16 [14] | [1] 40 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| New junction evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 34 (0.680) | 23/64 | 0.8 | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 1 (0.020) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | ||||
TAACGCCA.G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATG > REL606/3893543‑3893586
|
tAACGCCAGG.ACTGTACTGCACCCATTTTGTTGGAc > 1:1043061/1‑36 (MQ=14)
tAACGCCA.GTACTGTACTGCACCCATTTTGTTGGAc < 1:4057861/36‑1 (MQ=14)
aaCGCCAGG.ACTGTACTGCACCCATTTTGTTGGACg > 1:339039/1‑36 (MQ=14)
aaCGCCAGG.ACTGTACTGCACCCATTTTGTTGGACg > 1:4538808/1‑36 (MQ=14)
cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt < 1:2325459/36‑1 (MQ=11)
cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt > 1:2395945/1‑36 (MQ=11)
cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt > 1:261264/1‑36 (MQ=11)
cagg.ACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:3194748/4‑36 (MQ=255)
agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:3101448/3‑36 (MQ=25)
agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:3585946/34‑1 (MQ=25)
gg.ACTGTACTGCCCCCATTTTGTTGGCCGATGAAAt < 1:5256481/35‑1 (MQ=11)
gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:5678938/35‑1 (MQ=25)
gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:988429/2‑36 (MQ=25)
g.ACTGTACTGCACCCATTTTGTTGGACGATGAAATg > 1:2550472/1‑36 (MQ=35)
g.ACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:7010571/36‑1 (MQ=35)
g.ACTGTACTGCACCAATTTTGTTGGACGATGAAATg > 1:5145968/1‑36 (MQ=255)
|
TAACGCCA.G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATG > REL606/3893543‑3893586
Base quality scores:
ATCG
< 3 ≤
ATCG
< 9 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 32 ≤
ATCG
|