| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893578–3894995 | 3901930 | 6936–8353 | 16 [14] | [1] 40 | insJ‑5–[yieO] | insJ‑5, insK‑5, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| New junction evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 34 (0.680) | 23/64 | 0.8 | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 1 (0.020) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | ||||
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894963‑3894996
................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:3831686/36‑1 (MQ=35)
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 1:6955034/36‑1 (MQ=35)
ttTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:4247111/34‑1 (MQ=255)
TAACTGTCCAACTTTTTGGGGTCGGTACAGGTTGCC < 1:5130190/36‑1 (MQ=255)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 1:3926955/1‑36 (MQ=255)
AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 1:7481372/1‑36 (MQ=255)
AACTGTCCAACTTTTTGCGGTCAGTACAGGTTGCCC > 1:4034641/1‑36 (MQ=255)
ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 1:1658625/36‑1 (MQ=255)
TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:2228018/36‑1 (MQ=255)
CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA > 1:6447153/1‑36 (MQ=255)
AACTTTTTGGGGTCAGTACAGGTTGCCCCGGTGACC > 1:3417914/1‑36 (MQ=255)
ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 1:2205068/1‑36 (MQ=255)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:203217/36‑1 (MQ=255)
CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 1:2242740/36‑1 (MQ=255)
TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA > 1:2638320/1‑36 (MQ=255)
TTTTGGGGTCAGTACAGGTTGCCCAGGAGACCAGCA > 1:3329157/1‑36 (MQ=255)
TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC > 1:2738077/1‑36 (MQ=255)
TTGGGGTCAGTATAGGTTGCCCAGGTGACCAGCACG > 1:7456912/1‑36 (MQ=255)
TTGGGGTCAGTACAGGTTGCCCAGGTGACCCGCACG > 1:5447161/1‑36 (MQ=255)
TTGGGGTCAGTACAGGTTGCCCAGGTGACCCGCACG > 1:5293304/1‑36 (MQ=255)
TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:5677896/1‑36 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:2078368/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:1266118/36‑1 (MQ=255)
GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:768231/36‑1 (MQ=255)
GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG > 1:1498292/1‑36 (MQ=255)
GTCAGTACAGGTTGCCCAGGTGACCAGCACGCAGCC > 1:2400219/1‑36 (MQ=255)
TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA > 1:5588095/1‑36 (MQ=255)
TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 1:1217590/36‑1 (MQ=255)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:4928452/36‑1 (MQ=255)
AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG > 1:1819558/1‑36 (MQ=255)
TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA < 1:2226448/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:404236/36‑1 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 1:7459675/1‑36 (MQ=255)
ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:1221608/36‑1 (MQ=255)
CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACG > 1:3403329/1‑36 (MQ=255)
CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACG > 1:947199/1‑36 (MQ=255)
GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:4434522/1‑36 (MQ=255)
GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG < 1:6316423/36‑1 (MQ=255)
GGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:776216/1‑36 (MQ=255)
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG................................... > REL606/3894963‑3894996
................................CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966
Base quality scores:
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 21 ≤
ATCG
< 30 ≤
ATCG
< 32 ≤
ATCG
|