BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	16,972	IS150 (–) +3 bp	intergenic (‑14/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	16972 =	52 (0.980)	62 (1.160)	23/68	1.0	intergenic (‑14/‑516)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	3893554 =	NA (NA)	62 (1.160)	23/68	1.0	noncoding (1/1443 nt)	IS150	repeat region
*	?	REL606	= 16974	56 (1.190)	0 (0.000)	27/60	0.4	intergenic (‑16/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	2774435 =	NA (NA)	0 (0.000)	27/60	0.4	noncoding (1443/1443 nt)	IS150	repeat region


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG...................................  >  REL606/16937‑16974


...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  REL606/2774435‑2774471


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                         >  1:5592346/1‑36 (MQ=255)


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                         <  1:1932057/36‑1 (MQ=255)


 CACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                        <  1:3497434/36‑1 (MQ=255)


  ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                       >  1:1634997/1‑36 (MQ=255)


  ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                       <  1:5865477/36‑1 (MQ=255)


  ACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                       >  1:59974/1‑36 (MQ=255)


   CTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTT                                      <  1:2317586/36‑1 (MQ=255)


     CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGT                                    <  1:5617853/36‑1 (MQ=255)


      TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTA                                   >  1:3118647/1‑36 (MQ=255)


       ACATGTGTTCAGCATGTAGGGGGCCTCGGGTTGTAC                                  <  1:5767305/36‑1 (MQ=255)


       ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                                  >  1:2260557/1‑36 (MQ=255)


       ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGTAC                                  <  1:6925331/36‑1 (MQ=255)


        CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACT                                 <  1:6616203/36‑1 (MQ=255)


        CATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACT                                 <  1:2732254/36‑1 (MQ=255)


         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                                >  1:6690776/1‑36 (MQ=255)


         ATGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTG                                >  1:1214723/1‑36 (MQ=255)


          TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA                               <  1:1058422/36‑1 (MQ=255)


          TGTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGA                               <  1:4204041/36‑1 (MQ=255)


           GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                              >  1:260324/1‑36 (MQ=255)


           GTGTTCAGCATATAGGGGGCCTCGGGTTGTACTGAC                              <  1:2915708/36‑1 (MQ=255)


              TTCTGCATATAGGGGGCCTCGGGTTGTACTGACCCt                           <  1:5327146/36‑2 (MQ=255)


              TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC                           <  1:6869611/36‑1 (MQ=255)


              TTCAGCATATAGGGGGCCTCGGGTTGTACTGACCCC                           <  1:2972812/36‑1 (MQ=255)


               TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          <  1:4334149/36‑1 (MQ=255)


               TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          >  1:1527195/1‑36 (MQ=255)


               TCAGCATATAGGGGGCCTCGGGTTGTACTGACCCCA                          <  1:1832588/36‑1 (MQ=255)


                CAGCATATAGGGGGCCTCGGGTTGTACTGACCCCAA                         >  1:97758/1‑36 (MQ=255)


                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  1:5280400/36‑1 (MQ=255)


                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  1:3646995/36‑1 (MQ=255)


                  GCATATAGGGGGCCTCGGGTTGTACTGACCCCAAAA                       <  1:7413256/36‑1 (MQ=255)


                   CATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAA                      >  1:1513629/1‑36 (MQ=255)


                    ATATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAG                     <  1:6267473/36‑1 (MQ=255)


                    ATATAGGGAGCCTCGGGTTGTACTGACCCCAAAAAG                     <  1:2562359/36‑1 (MQ=255)


                     TATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGT                    <  1:2552035/36‑1 (MQ=255)


                     TATAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGT                    <  1:1849788/36‑1 (MQ=255)


                       TAGGGGGCCTCGGGTTGTACTGACCCCAAAAAGATG                  >  1:3727708/1‑36 (MQ=255)


                         GGGGGCCGCGGGTTGTACTGACCCCAAAAAGTTGGA                <  1:5480784/36‑1 (MQ=255)


                           gaGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACA              <  1:2249972/34‑1 (MQ=255)


                            GGCCTCGGGTTGTACTGACCCCAAAAAGTTGGACAG             <  1:3242481/36‑1 (MQ=255)


                             gtCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGT            <  1:2234748/34‑1 (MQ=255)


                              CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTc           <  1:7417408/36‑2 (MQ=255)


                              CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  1:6937842/36‑1 (MQ=255)


                              CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  1:6150885/36‑1 (MQ=255)


                              CCTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTT           <  1:3398436/36‑1 (MQ=255)


                               CTCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTA          <  1:6353651/36‑1 (MQ=255)


                               CTCGGGTTGTACTGACCCCAAAAAGTTGAACAGTTA          >  1:4553919/1‑36 (MQ=255)


                                TCGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAA         >  1:812306/1‑36 (MQ=255)


                                 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        <  1:466506/36‑1 (MQ=40)


                                 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        >  1:3483415/1‑36 (MQ=40)


                                 CGGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA        <  1:5631086/36‑1 (MQ=40)


                                  GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC       >  1:2245043/1‑36 (MQ=38)


                                  GGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC       >  1:5058971/1‑36 (MQ=38)


                                   GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA      >  1:4993412/1‑36 (MQ=35)


                                   GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA      <  1:3770937/36‑1 (MQ=35)


                                    GTTTTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  1:5883552/36‑1 (MQ=12)


                                    GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  1:7201092/36‑1 (MQ=32)


                                    GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     <  1:7389542/36‑1 (MQ=32)


                                    GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     >  1:5463935/1‑36 (MQ=32)


                                    GTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC     >  1:1315193/1‑36 (MQ=32)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAATACGAG  >  1:557980/1‑36 (MQ=0)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:3885287/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:7485806/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:7314038/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:2940052/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:7074278/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:706402/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:3998492/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:1552093/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:1915204/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:6602013/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:6569466/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:5061834/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:521239/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:6011647/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:1980845/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:595800/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:5815840/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:5558821/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:570019/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:5669869/36‑1 (MQ=1)


                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  1:2274456/1‑36 (MQ=1)


                                       GTACTGACCCCAAAAAGGTGGACAGTTAAACACGAG  <  1:6878084/36‑1 (MQ=0)


                                       GTAATGACCCCAAAAAGTTGGACAGTTAAACACGAG  <  1:2587831/36‑1 (MQ=0)


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTG...................................  >  REL606/16937‑16974


...................................GGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG  >  REL606/2774435‑2774471

Base quality scores:


ATCG

< 3 ≤


ATCG

< 12 ≤


ATCG

< 19 ≤


ATCG

< 29 ≤


ATCG

< 32 ≤


ATCG