Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 16,972 IS150 (–) +3 bp intergenic (‑14/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 16972 =52 (0.980)62 (1.160) 23/68 1.0 intergenic (‑14/‑516) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region
* ? REL606 = 1697456 (1.190)0 (0.000) 27/60 0.4 intergenic (‑16/‑514) mokC/nhaA regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region

CTGGGTACTCAGGTCGAAATCTAACGCCA.G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3893522‑3893586
                                  |                                
cTGGGTACTCAGGTCGAAATCTAACGCCAGG.ACTGt                                >  1:985841/1‑36 (MQ=25)
cTGGGTACTCAGGTCGAAATCTAACGCCAGG.ACTGt                                <  1:6915090/36‑1 (MQ=25)
cTGGGTACTCAGGTCGAAATCTAACGCCAGG.ACTGt                                <  1:2238065/36‑1 (MQ=25)
 tGGGTACGCAGGTCGAAATCTAACGCCAGG.ACTGTa                               <  1:5060231/36‑1 (MQ=21)
  gggTACTCAGGTCGAAATCTAACGCCAGG.ACTGTAc                              <  1:5657037/36‑1 (MQ=25)
   ggTACTCAGGTCGAAATCTAACGCCAGG.ACTGTACt                             <  1:5888806/36‑1 (MQ=25)
    gTACTCAGGTCGAAATCTAACGCCAGG.ACTGTACTg                            >  1:3490016/1‑36 (MQ=25)
     tACTCAGGTCGAAATCTAACGCCAGG.ACTGTACtac                           >  1:2535997/1‑34 (MQ=21)
     tACTCAGGTCGAAATCTAACGCCAGG.ACTGTACTGc                           >  1:1497438/1‑36 (MQ=25)
     tACTCAGGTCGAAATCTAACGCCAGG.ACTGTACTGc                           <  1:6166226/36‑1 (MQ=25)
       cgcAGATCGAAATCTAACGCCAGG.ACTGTACTGCAc                         <  1:4842654/34‑1 (MQ=18)
       cTCAGGTCGAAATCTAACGCCAGG.ACTGTACTGCAc                         <  1:6299113/36‑1 (MQ=25)
         cAGGTCGAAATCTAACGCCAGG.ACTGTACTGCAccc                       <  1:2006929/36‑1 (MQ=25)
         cAGGTCGAAATCTAACGCCAGG.ACTGTACTGCAccc                       <  1:6675520/36‑1 (MQ=25)
          aGGTAGAAATCTAACGCCAGG.ACTGTACTGCACCCa                      <  1:6547573/36‑1 (MQ=21)
            gTCGAAATCTAACGCCAGG.ACTGTACTGCACCCAtt                    <  1:4963146/36‑1 (MQ=21)
            gTCGAAATCTAACGCCAGG.ACTGTACTGCACCCAtt                    >  1:4529630/1‑36 (MQ=21)
            gTCGAAATCTAACACCAGG.CCTGTACTGCACCCAtt                    >  1:833964/1‑36 (MQ=17)
             tCGAATTCTAACGCCAGG.ACTGTACTGCACCCAttt                   <  1:6750703/36‑1 (MQ=18)
             tCGAAATCTAACGCCAGG.ACTGTACTGCACCCAttt                   >  1:1765962/1‑36 (MQ=21)
              cGAAATCTAACGCCAGG.ACTGTACTGCACCCAtttt                  <  1:6629185/36‑1 (MQ=21)
              cGAAATCTAACGCCAGG.ACTGAACTGCACCCAtttt                  >  1:55673/1‑36 (MQ=18)
               gAAATCTAACGCCAGG.ACTGTACTGCACCCATTttg                 >  1:3468000/1‑36 (MQ=18)
               gAAATCTAACGCCAGG.ACTGTACTGCACCCATTttg                 >  1:1095798/1‑36 (MQ=18)
               gAAATCTAACGCCAGG.ACTGTACTGCACCCATAttg                 >  1:6082214/1‑36 (MQ=18)
               aaaaTCTAACGCCAGG.ACTGTACTGCACCCATTttg                 <  1:943748/35‑1 (MQ=18)
                aaaTCTAACGCCAGG.ACTGTACTGCACCCATTttgt                >  1:5236549/1‑36 (MQ=18)
                 aaTCTAACGCCAGG.ACTGTACTGCACCCATTttgtt               <  1:3927788/36‑1 (MQ=18)
                 aaTCTAACGCCAGG.ACTGTACTGCACCCATTttgtt               <  1:7099602/36‑1 (MQ=18)
                 aaTCTAACGCCAGG.ACTGTACTGCACCCATTttgtt               >  1:2212070/1‑36 (MQ=18)
                  aTCTAACGCCAGG.ACTGTACTGCACCCATTttgttg              <  1:5294328/36‑1 (MQ=17)
                   tCTAACGCCAGG.ACTGTACTGCACCCATTTTGTTgg             >  1:7379227/1‑36 (MQ=17)
                    cTAACGCCAGG.ACTGTACTGCACCCATTTTGTTGGa            >  1:3083527/1‑36 (MQ=17)
                    cTAACGCCAGG.ACTGTACTGCACCCATTTTGTTGGa            <  1:2951286/36‑1 (MQ=17)
                     tAACGCCAGG.ACTGTACTGCACCCATTTTGTTGGAc           >  1:1043061/1‑36 (MQ=14)
                     tAACGCCA.GTACTGTACTGCACCCATTTTGTTGGAc           <  1:4057861/36‑1 (MQ=14)
                      aaCGCCAGG.ACTGTACTGCACCCATTTTGTTGGACg          >  1:4538808/1‑36 (MQ=14)
                      aaCGCCAGG.ACTGTACTGCACCCATTTTGTTGGACg          >  1:339039/1‑36 (MQ=14)
                        cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt        >  1:261264/1‑36 (MQ=11)
                        cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt        >  1:2395945/1‑36 (MQ=11)
                        cGCCAGG.ACTGTACTGCACCCATTTTGTTGGACGAt        <  1:2325459/36‑1 (MQ=11)
                           cagg.ACTGTACTGCACCCATTTTGTTGGACGATGaa     >  1:3194748/4‑36 (MQ=255)
                            agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa    <  1:3585946/34‑1 (MQ=25)
                            agg.ACTGTACTGCACCCATTTTGTTGGACGATGaaa    >  1:3101448/3‑36 (MQ=25)
                             gg.ACTGTACTGCCCCCATTTTGTTGGCCGATGAAAt   <  1:5256481/35‑1 (MQ=11)
                             gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt   <  1:5678938/35‑1 (MQ=25)
                             gg.ACTGTACTGCACCCATTTTGTTGGACGATGAAAt   >  1:988429/2‑36 (MQ=25)
                              g.ACTGTACTGCACCCATTTTGTTGGACGATGAAATg  <  1:7010571/36‑1 (MQ=35)
                              g.ACTGTACTGCACCCATTTTGTTGGACGATGAAATg  >  1:2550472/1‑36 (MQ=35)
                              g.ACTGTACTGCACCAATTTTGTTGGACGATGAAATg  >  1:5145968/1‑36 (MQ=255)
                                  |                                
CTGGGTACTCAGGTCGAAATCTAACGCCA.G.ACTGTACTGCACCCATTTTGTTGGACGATGAAATG  >  REL606/3893522‑3893586

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG