BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	16,972	IS150 (–) +3 bp	intergenic (‑14/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	16972 =	52 (0.980)	62 (1.160)	23/68	1.0	intergenic (‑14/‑516)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	3893554 =	NA (NA)	62 (1.160)	23/68	1.0	noncoding (1/1443 nt)	IS150	repeat region
*	?	REL606	= 16974	56 (1.190)	0 (0.000)	27/60	0.4	intergenic (‑16/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	2774435 =	NA (NA)	0 (0.000)	27/60	0.4	noncoding (1443/1443 nt)	IS150	repeat region

Only 100 of 116 total aligned reads displayed.


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007


gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                     >  1:5592346‑M1/1‑36 (MQ=255)


gCACTCTACATGTGTTCAGCATATAGGGGGCCTCGG                                     <  1:1932057‑M1/36‑1 (MQ=255)


 ccatttcatcgtccaacaaaatgggtgcagtacagg                                    >  1:4758056‑M1/35‑36 (MQ=255)


 ccatttcatcgtccaacaaaatgggagcagtacagg                                    >  1:3685946‑M1/35‑36 (MQ=255)


 cACTCTACATGTGTTCAGCATATAGGGGGCCTCGGG                                    <  1:3497434‑M1/36‑1 (MQ=255)


  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:6973936‑M1/34‑36 (MQ=255)


  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   <  1:7291405‑M1/3‑1 (MQ=255)


  catttcatcgtccaacaaaatgggtgcagtacaGGt                                   >  1:3078541‑M1/34‑36 (MQ=255)


  aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                   <  1:5865477‑M1/36‑1 (MQ=255)


  aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                   >  1:59974‑M1/1‑36 (MQ=255)


  aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGT                                   >  1:1634997‑M1/1‑36 (MQ=255)


   ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTt                                  <  1:2317586‑M1/36‑2 (MQ=255)


   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:2444431‑M1/33‑36 (MQ=255)


   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:3084830‑M1/33‑36 (MQ=255)


   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:3697993‑M1/33‑36 (MQ=255)


   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:1082745‑M1/33‑36 (MQ=255)


   atttcatcgtccaacaaaatgggtgcagtacaGGtt                                  <  1:5323732‑M1/4‑1 (MQ=255)


   attacatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:4664655‑M1/33‑36 (MQ=255)


   atatcatcgtccaacaaaatgggtgcagtacaGGtt                                  >  1:2647117‑M1/33‑36 (MQ=255)


    tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                 >  1:3906480‑M1/32‑36 (MQ=255)


    tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                 >  1:2878251‑M1/32‑36 (MQ=255)


    tttcatcgtccaacaaaatgggtgcagtacaGGTTg                                 <  1:4774667‑M1/5‑1 (MQ=255)


     ttcatcgtccaacaaaatgggtgcagtacaGGTTGa                                >  1:744184‑M1/31‑36 (MQ=255)


     ctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgt                                <  1:5617853‑M1/36‑4 (MQ=255)


      tcatcgtccaacaaaatgggttcagtacaGGTTGAt                               >  1:6849688‑M1/30‑36 (MQ=255)


      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:1225224‑M1/30‑36 (MQ=255)


      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:6278753‑M1/30‑36 (MQ=255)


      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:3454125‑M1/30‑36 (MQ=255)


      tcatcgtccaacaaaatgggtgcagtacaGGTTGAt                               >  1:7160126‑M1/30‑36 (MQ=255)


      tACATGTGTTCAGCATATAGGGGGCCTCGGGTtgta                               >  1:3118647‑M1/1‑32 (MQ=255)


       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              <  1:1182391‑M1/8‑1 (MQ=255)


       catcgtccaacaaaatgggtgcagtacaGGTTGATa                              <  1:3865091‑M1/8‑1 (MQ=255)


       aCATGTGTTCAGCATGTAGGGGGCCTCGGGTtgtac                              <  1:5767305‑M1/36‑6 (MQ=255)


       aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                              <  1:6925331‑M1/36‑6 (MQ=255)


       aCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtac                              >  1:2260557‑M1/1‑31 (MQ=255)


        cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                             <  1:6616203‑M1/36‑7 (MQ=255)


        cATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact                             <  1:2732254‑M1/36‑7 (MQ=255)


        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             <  1:5640521‑M1/9‑1 (MQ=255)


        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:2521671‑M1/28‑36 (MQ=255)


        atcgtccaacaaaatgggtgcagtacaGGTTGATAg                             >  1:6161269‑M1/28‑36 (MQ=255)


         aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                            >  1:1214723‑M1/1‑29 (MQ=255)


         aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactg                            >  1:6690776‑M1/1‑29 (MQ=255)


          tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                           <  1:1058422‑M1/36‑9 (MQ=255)


          tgtgTTCAGCATATAGGGGGCCTCGGGTtgtactga                           <  1:4204041‑M1/36‑9 (MQ=255)


          cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                           <  1:5739600‑M1/11‑1 (MQ=255)


          cgtccaacaaaatgggtgcagtacaGGTTGATAGTa                           >  1:2844169‑M1/26‑36 (MQ=255)


           gtgtTCAGCATATAGGGGGCCTCGGGTtgtactgac                          >  1:260324‑M1/1‑27 (MQ=255)


           gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                          <  1:5618638‑M1/12‑1 (MQ=255)


           gtccaacaaaatgggtgcagtacaGGTTGATAGTaa                          >  1:6272350‑M1/25‑36 (MQ=255)


            tccaacaaaatgggtgcagtacaGGTTGATAGTaaa                         >  1:1969473‑M1/24‑36 (MQ=255)


             ccaacaaaatgggtgcagtacaGGTTGATAGTaaaa                        >  1:6269135‑M1/23‑36 (MQ=255)


              ttCTGCATATAGGGGGCCTCGGGTtgtactgaccct                       <  1:5327146‑M1/36‑13 (MQ=255)


              ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                       <  1:2972812‑M1/36‑13 (MQ=255)


              ttCAGCATATAGGGGGCCTCGGGTtgtactgacccc                       <  1:6869611‑M1/36‑13 (MQ=255)


              caacaaaatgggtgcagtacaGGTTGATAGTAAAat                       >  1:1495778‑M1/22‑36 (MQ=255)


              caacaaaatgggtgcagtacaGGTTGATAGTAAAat                       <  1:1325593‑M1/15‑1 (MQ=255)


              caacaaaatgggtgcagtacaGGTTGATAGTAAAat                       >  1:3322049‑M1/22‑36 (MQ=255)


               tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                      <  1:4334149‑M1/36‑14 (MQ=255)


               tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                      <  1:1832588‑M1/36‑14 (MQ=255)


               tCAGCATATAGGGGGCCTCGGGTtgtactgacccca                      >  1:1527195‑M1/1‑23 (MQ=255)


               aacaaaatgggtgcagtacaGGTTGATAGTAAAata                      >  1:125870‑M1/21‑36 (MQ=255)


               aacaaaatgggtgcagtacaGGTTGATAGTAAAata                      <  1:73612‑M1/16‑1 (MQ=255)


                cAGCATATAGGGGGCCTCGGGTtgtactgaccccaa                     >  1:97758‑M1/1‑22 (MQ=255)


                acataatgggtgcagtacaGGTTGATAGTAAAatat                     >  1:4790515‑M1/20‑36 (MQ=255)


                  gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                   <  1:5280400‑M1/36‑17 (MQ=255)


                  gCATATAGGGGGCCTCGGGTtgtactgaccccaaaa                   <  1:3646995‑M1/36‑17 (MQ=255)


                  aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                   <  1:7309779‑M1/19‑1 (MQ=255)


                  aaaatgggtgcagtacaGGTTGATAGTAAAATATCa                   >  1:4958101‑M1/18‑36 (MQ=255)


                   cATATAGGGGGCCTCGGGTtgtactgaccccaaaaa                  >  1:1513629‑M1/1‑19 (MQ=255)


                    atatAGGGGGCCTCGGGTtgtactgaccccaaaaag                 <  1:6267473‑M1/36‑19 (MQ=255)


                    atatAGGGAGCCTCGGGTtgtactgaccccaaaaag                 <  1:2562359‑M1/36‑19 (MQ=255)


                    aatgggtgcagtacaGGTTGATAGTAAAATATCACt                 >  1:6013498‑M1/16‑36 (MQ=255)


                    aatgggtgcagtacaGGTTGATAGTAAAATATCACt                 >  1:270010‑M1/16‑36 (MQ=255)


                     atgggtgcagtacaGGTTGATAGTAAAATATCACTc                >  1:2469321‑M1/15‑36 (MQ=255)


                       gggtgcagtacaGGTTGATAGTAAAATATTACTCgg              <  1:7078153‑M1/24‑1 (MQ=255)


                         gggggCCGCGGGTtgtactgaccccaaaaagttgga            <  1:5480784‑M1/36‑24 (MQ=255)


                           gagccTCGGGTtgtactgaccccaaaaagttggaca          <  1:2249972‑M1/34‑26 (MQ=255)


                            ggCCTCGGGTtgtactgaccccaaaaagttggacag         <  1:3242481‑M1/36‑27 (MQ=255)


                            cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt         >  1:5088594‑M1/8‑36 (MQ=255)


                            cagtacaGGTTGATAGTAAAATATCACTCGGGGCtt         >  1:1711134‑M1/8‑36 (MQ=255)


                             gtctcGGGTtgtactgaccccaaaaagttggacagt        <  1:2234748‑M1/34‑28 (MQ=255)


                              gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt       >  1:857310‑M1/6‑36 (MQ=255)


                              gtacaGGTTGATAGTAAAATATCACTCGGGGCtttt       >  1:2447902‑M1/6‑36 (MQ=255)


                              ccTCGGGTtgtactgaccccaaaaagttggacagtt       <  1:6150885‑M1/36‑29 (MQ=255)


                              ccTCGGGTtgtactgaccccaaaaagttggacagtt       <  1:6937842‑M1/36‑29 (MQ=255)


                              ccTCGGGTtgtactgaccccaaaaagttggacagtc       <  1:7417408‑M1/36‑29 (MQ=255)


                               tacaGGTTGATAGTAAAATATCACTCGGGGCTTTtc      >  1:4755282‑M1/5‑36 (MQ=255)


                               cTCGGGTtgtactgaccccaaaaagttggacagtta      <  1:6353651‑M1/36‑30 (MQ=255)


                               cTCGGGTtgtactgaccccaaaaagttgaacagtta      >  1:4553919‑M1/1‑7 (MQ=255)


                                tCGGGTtgtactgaccccaaaaagttggacagttaa     >  1:812306‑M1/1‑6 (MQ=255)


                                acaGGTTGATAGTAAAATATCACTCGGGGCTTTtct     >  1:922425‑M1/4‑36 (MQ=255)


                                 caGGTTGATAGTAAAATATCACTCGGGGCTTTtctc    <  1:2171522‑M1/34‑1 (MQ=255)


                                 cGGGTtgtactgaccccaaaaagttggacagttaaa    >  1:3483415‑M1/1‑5 (MQ=255)


                                 cGGGTtgtactgaccccaaaaagttggacagttaaa    <  1:466506‑M1/36‑32 (MQ=255)


                                  gggTtgtactgaccccaaaaagttggacagttaaac   >  1:2245043‑M1/1‑4 (MQ=255)


                                  gggTtgtactgaccccaaaaagttggacagttaaac   >  1:5058971‑M1/1‑4 (MQ=255)


                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   >  1:50335‑M1/2‑36 (MQ=255)


                                  aGGTTGATAGTAAAATATCACTCGGGGCTTTTctct   >  1:3947821‑M1/2‑36 (MQ=255)


                                   ggTtgtactgaccccaaaaagttggacagttaaaca  <  1:3770937‑M1/36‑34 (MQ=255)


                                   ggTtgtactgaccccaaaaagttggacagttaaaca  >  1:4993412‑M1/1‑3 (MQ=255)


GCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTA  >  REL606/16937‑17007

Base quality scores:


ATCG

< 3 ≤


ATCG

< 13 ≤


ATCG

< 22 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG