BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	REL606	16,972	IS150 (–) +3 bp	intergenic (‑14/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	16972 =	52 (0.980)	62 (1.160)	23/68	1.0	intergenic (‑14/‑516)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	3893554 =	NA (NA)	62 (1.160)	23/68	1.0	noncoding (1/1443 nt)	IS150	repeat region
*	?	REL606	= 16974	56 (1.190)	0 (0.000)	27/60	0.4	intergenic (‑16/‑514)	mokC/nhaA	regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter
*	?	REL606	2774435 =	NA (NA)	0 (0.000)	27/60	0.4	noncoding (1443/1443 nt)	IS150	repeat region


TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774400‑2774468


ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                   <  1:2470290/36‑1 (MQ=255)


 tCGTATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                                  <  1:4599507/36‑1 (MQ=255)


   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                >  1:6764302/1‑36 (MQ=255)


   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                <  1:1308272/36‑1 (MQ=255)


   gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                <  1:3949671/36‑1 (MQ=255)


     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                              >  1:1649042/1‑36 (MQ=255)


     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                              >  1:4375998/1‑36 (MQ=255)


     aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                              >  1:4559300/1‑36 (MQ=255)


     aTTGTTTGGGTTCGAAAGTAAGCCTCAGGTTGTACt                              >  1:4350064/1‑36 (MQ=255)


      ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACtc                             >  1:4111582/1‑35 (MQ=255)


      ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                             <  1:5308196/36‑1 (MQ=255)


        gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                           <  1:6202099/36‑1 (MQ=255)


         tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                          >  1:1773334/1‑36 (MQ=255)


         tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                          <  1:324600/36‑1 (MQ=255)


         tttGGGTTCGAACGTAAGCCTCAGGTCGTACCGAcc                          >  1:1852927/1‑36 (MQ=25)


          ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                         <  1:1443024/36‑1 (MQ=255)


           tGGGTTCGAACGTAAGCCTTAGGTTGTACTGActcc                        <  1:2935815/36‑1 (MQ=25)


            gggTTCGAACGTAAGCGTCAGGTTGTACTGACCCCa                       <  1:1453775/36‑1 (MQ=255)


            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                       <  1:5904004/36‑1 (MQ=255)


            gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                       <  1:4544524/36‑1 (MQ=255)


             ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                      <  1:4610102/36‑1 (MQ=255)


              gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                     <  1:4217395/36‑1 (MQ=255)


              gTTCAAACGTAAGCCTCAGGCTGTACTGACCCCaaa                     >  1:4826084/1‑36 (MQ=18)


               ttCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                    <  1:2060825/36‑1 (MQ=255)


                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                   >  1:2193230/1‑36 (MQ=255)


                tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                   >  1:6402545/1‑36 (MQ=255)


                 cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAg                  <  1:1025905/36‑1 (MQ=255)


                 cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAg                  <  1:1174110/36‑1 (MQ=255)


                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:7484880/1‑36 (MQ=255)


                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:4487150/1‑36 (MQ=255)


                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 >  1:1945578/1‑36 (MQ=255)


                  gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                 <  1:4983030/36‑1 (MQ=255)


                   aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt                >  1:915363/1‑36 (MQ=255)


                    aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg               >  1:6396017/1‑36 (MQ=255)


                     cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg              <  1:453574/36‑1 (MQ=255)


                     cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg              <  1:2555338/36‑1 (MQ=255)


                     cGTAAGCCTCAGGGTGTACTGACCCCAAAAAGTTgg              >  1:2279953/1‑36 (MQ=255)


                      gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa             >  1:3969610/1‑36 (MQ=255)


                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc            <  1:907820/36‑1 (MQ=255)


                       tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc            >  1:7418120/1‑36 (MQ=255)


                        aaGCCTCAGGTTGTACTGACCCCCAAACGTTGGACa           >  1:2774679/1‑36 (MQ=18)


                        aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa           <  1:5457133/36‑1 (MQ=255)


                        aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa           <  1:2131548/36‑1 (MQ=255)


                         aGCCTCAGGTTGTACTGACCCCAAAAAGATGGACAg          >  1:7251500/1‑36 (MQ=255)


                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         >  1:1961921/1‑36 (MQ=255)


                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         <  1:3662607/36‑1 (MQ=255)


                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         <  1:3890298/36‑1 (MQ=255)


                          gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt         <  1:5241336/36‑1 (MQ=255)


                           ccTCGGGTTGTACTGACCCCAAAAAGTTGGCCCGtt        >  1:4883163/1‑36 (MQ=14)


                            cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa       >  1:3225078/1‑36 (MQ=255)


                               aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac    >  1:4410442/1‑36 (MQ=38)


                               aGGTTGTACTGACCCCAAAAAGTTGGACAGTAaaaa    >  1:1704240/1‑35 (MQ=255)


                               aGGTTGTACTGACCCCAAAAAGTTGGACAGATAAac    >  1:6144521/1‑36 (MQ=255)


                                acctGTACTGACCCCAAGAAGTTGGACAGTTAAgca   <  1:3931537/33‑1 (MQ=11)


                                 ggtGTACTGACCCCAAAAAGTTGGACAGTTCAccac  >  1:5827753/3‑36 (MQ=11)


                                 gTTGTACTGACCCCAAAAAGGTGGACAGGGAAacac  <  1:5256037/36‑1 (MQ=11)


TTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC  >  REL606/2774400‑2774468

Base quality scores:


ATCG

< 3 ≤


ATCG

< 10 ≤


ATCG

< 19 ≤


ATCG

< 29 ≤


ATCG

< 32 ≤


ATCG