BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	REL606	3,482,398	Δ25 bp	100%	coding (714‑738/2706 nt)	malT →	transcriptional regulator MalT

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3482398	3482422	25	147 [0]	[0] 149	malT	transcriptional regulator MalT

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 3482397	0 (0.000)	108 (1.140)	56/80	NT	100%	coding (713/2706 nt)	malT	transcriptional regulator MalT
*	?	REL606	3482423 =	0 (0.000)	108 (1.140)	56/80	NT	100%	coding (739/2706 nt)	malT	transcriptional regulator MalT

Only 100 of 147 total aligned reads displayed.

ACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATC  >  REL606/3482347‑3482447

aCTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATaa                                                    >  1:7553834/1‑51 (MQ=255)

aCTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATaa                                                    <  1:8675557/51‑1 (MQ=255)

 cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa                                                   >  1:9679710‑M1/1‑50 (MQ=255)

 cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa                                                   <  1:3443775‑M1/51‑2 (MQ=255)

 cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa                                                   <  1:6674529‑M1/51‑2 (MQ=255)

 cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa                                                   >  1:3711632‑M1/1‑50 (MQ=255)

 cTACAGCTAATCGCCCTCTCCACCCGGCAGAATACCCACTCAGCCCATAAa                                                   <  1:7347876‑M1/51‑2 (MQ=255)

  tACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaa                                                  <  1:9749478‑M1/51‑3 (MQ=255)

  tACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaa                                                  <  1:3545570‑M1/51‑3 (MQ=255)

  tACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaa                                                  >  1:5574620‑M1/1‑49 (MQ=255)

   aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat                                                 >  1:3089801‑M1/1‑48 (MQ=255)

   aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat                                                 <  1:9077641‑M1/51‑4 (MQ=255)

   aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat                                                 <  1:3090495‑M1/51‑4 (MQ=255)

   aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat                                                 <  1:4795578‑M1/51‑4 (MQ=255)

     aGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgc                                               <  1:9349548‑M1/51‑6 (MQ=255)

      gCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcc                                              <  1:9919367‑M1/51‑7 (MQ=255)

       cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca                                             >  1:10175745‑M1/1‑44 (MQ=255)

       cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca                                             <  1:500067‑M1/51‑8 (MQ=255)

       cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca                                             <  1:1823080‑M1/51‑8 (MQ=255)

        tAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccag                                            <  1:8090551‑M1/51‑9 (MQ=255)

         aaTCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagc                                           <  1:10235424‑M1/51‑10 (MQ=255)

           tCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagcca                                         <  1:8598639‑M1/51‑12 (MQ=255)

           tCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagcca                                         <  1:3203014‑M1/51‑12 (MQ=255)

            cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat                                        <  1:5423310‑M1/51‑13 (MQ=255)

            cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat                                        <  1:5620988‑M1/51‑13 (MQ=255)

             gCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatc                                       <  1:4166070‑M1/51‑14 (MQ=255)

             gCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatc                                       >  1:4023598‑M1/1‑38 (MQ=255)

              cccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatct                                      <  1:7748194‑M1/51‑15 (MQ=255)

               ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt                                     <  1:2022854‑M1/51‑16 (MQ=255)

               ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt                                     <  1:127474‑M1/51‑16 (MQ=255)

               ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt                                     >  1:1587024‑M1/1‑36 (MQ=255)

                ctctCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatcttt                                    <  1:1352796‑M1/51‑17 (MQ=255)

                ctctCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatcttt                                    <  1:1008253‑M1/51‑17 (MQ=255)

                 tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc                                   >  1:10016745‑M1/1‑34 (MQ=255)

                 tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc                                   <  1:8603797‑M1/51‑18 (MQ=255)

                 tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc                                   <  1:7334941‑M1/51‑18 (MQ=255)

                 tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc                                   >  1:6962591‑M1/1‑34 (MQ=255)

                  ctcCGCCCGGCAGAATACCCCCTCAGCCCATAAaatgccagccatctttcg                                  <  1:7813115‑M1/51‑19 (MQ=255)

                  ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg                                  <  1:5443816‑M1/51‑19 (MQ=255)

                  ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg                                  >  1:7565586‑M1/1‑33 (MQ=255)

                  ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg                                  <  1:9627594‑M1/51‑19 (MQ=255)

                   tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg                                 >  1:9297572‑M1/1‑32 (MQ=255)

                     cGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggat                               <  1:8654496‑M1/51‑22 (MQ=255)

                     cGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggat                               <  1:10414945‑M1/51‑22 (MQ=255)

                     cGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggat                               >  1:1685605‑M1/1‑30 (MQ=255)

                      gCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggatt                              >  1:8972312‑M1/1‑29 (MQ=255)

                       cccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggatta                             >  1:9253684‑M1/1‑28 (MQ=255)

                       cccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggatta                             <  1:10397090‑M1/51‑24 (MQ=255)

                        ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat                            <  1:9739837‑M1/51‑25 (MQ=255)

                        ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat                            <  1:7881938‑M1/51‑25 (MQ=255)

                        ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat                            >  1:9764287‑M1/1‑27 (MQ=255)

                        ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat                            >  1:3392860‑M1/1‑27 (MQ=255)

                        ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat                            >  1:6525783‑M1/1‑27 (MQ=255)

                         cGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatc                           >  1:10066128‑M1/1‑26 (MQ=255)

                         cGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatc                           >  1:1898042‑M1/1‑26 (MQ=255)

                          ggCAGAATACCCTCTCAGCCCATAAaatgccagccatctttcggattatct                          <  1:9148227‑M1/51‑27 (MQ=255)

                          ggCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatct                          <  1:2279443‑M1/51‑27 (MQ=255)

                          ggCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatct                          <  1:8441919‑M1/51‑27 (MQ=255)

                           gCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctg                         >  1:4706819‑M1/1‑24 (MQ=255)

                            cAGAATACCCACTCAGCCCATAAaatgccagctatctttcggattatctgg                        >  1:2610674‑M1/1‑23 (MQ=255)

                             aGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggt                       <  1:1138229‑M1/51‑30 (MQ=255)

                             aGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggt                       >  1:8861118‑M1/1‑22 (MQ=255)

                             aGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggt                       <  1:9506223‑M1/51‑30 (MQ=255)

                              gAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtc                      <  1:9715142‑M1/51‑31 (MQ=255)

                                aTACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcga                    <  1:6281906‑M1/51‑33 (MQ=255)

                                aTACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcga                    <  1:4027169‑M1/51‑33 (MQ=255)

                                 tACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgat                   >  1:10708308‑M1/1‑18 (MQ=255)

                                 tACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgat                   <  1:6589388‑M1/51‑34 (MQ=255)

                                  aCCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatg                  >  1:2617190‑M1/1‑17 (MQ=255)

                                  aCCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatg                  >  1:7628864‑M1/1‑17 (MQ=255)

                                   cccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatna                 <  1:1983335‑M1/51‑36 (MQ=255)

                                    ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag                <  1:6946101‑M1/51‑37 (MQ=255)

                                    ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag                <  1:10491075‑M1/51‑37 (MQ=255)

                                    ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag                <  1:1281165‑M1/51‑37 (MQ=255)

                                    ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag                >  1:4857404‑M1/1‑15 (MQ=255)

                                     cACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgagg               <  1:5673844‑M1/51‑38 (MQ=255)

                                       cTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgaggtt             <  1:9493466‑M1/51‑40 (MQ=255)

                                       cTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag                <  1:4470921‑M1/48‑37 (MQ=255)

                                         cAGCCCATAAaatgccagccatctttcggattatctggtcgatgaggtttt           <  1:10032484‑M1/51‑42 (MQ=255)

                                         cAGCCCATAAaatgccagccatctttcggattatctggtcgatgaggtttt           <  1:9319358‑M1/51‑42 (MQ=255)

                                         cAGCCCATAAaatgccagccatctttcggattatctggtcgatgaggtttt           <  1:536316‑M1/51‑42 (MQ=255)

                                          aGCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttg          >  1:10471970‑M1/1‑9 (MQ=255)

                                           gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg         <  1:3555017‑M1/51‑44 (MQ=255)

                                           gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg         >  1:864930‑M1/1‑8 (MQ=255)

                                           gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg         <  1:2435073‑M1/51‑44 (MQ=255)

                                            cccATAAaatgccagccatctttcggattatctggtcgatgaggttttgga        >  1:4595542‑M1/1‑7 (MQ=255)

                                            cccATAAaatgccagccatctttcggattatctggtcgatgaggttttgga        <  1:3255170‑M1/51‑45 (MQ=255)

                                              cATAAaatgccagccatctttcggattatctggtcgatgaggttttggata      <  1:5505325‑M1/51‑47 (MQ=255)

                                              cATAAaatgccagccatctttcggattatctggtcgatgaggttttggata      >  1:10940071‑M1/1‑5 (MQ=255)

                                               aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa     >  1:6741041‑M1/1‑4 (MQ=255)

                                               aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa     <  1:4151773‑M1/51‑48 (MQ=255)

                                                tAAaatgccagccatctttcggattatctggtcgatgaggttttggataac    <  1:5742136‑M1/51‑49 (MQ=255)

                                                 aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg   <  1:386761‑M1/51‑50 (MQ=255)

                                                 aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg   >  1:3398469‑M1/1‑2 (MQ=255)

                                                 aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg   <  1:9890450‑M1/51‑50 (MQ=255)

                                                 aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg   <  1:6773584‑M1/51‑50 (MQ=255)

                                                  aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt  <  1:10113367‑M1/51‑51 (MQ=255)

                                                  aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt  >  1:1072688‑M1/1‑1 (MQ=255)

                                                  aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt  >  1:7444656‑M1/1‑1 (MQ=255)

                                                  aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt  <  1:5472493‑M1/51‑51 (MQ=255)

ACTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATC  >  REL606/3482347‑3482447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`