| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | REL606 | 3,537,178 | +GTACTGACCCCAAAA :: IS150 (–) :: +CAA | 100% | coding (40/2199 nt) | zntA → | zinc, cobalt and lead efflux system |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 666133 | NA (NA) | 65 (0.990) +TGGGGTCAGTAC |
37/56 | NT | 100% | pseudogene (355/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 |
| ? | REL606 | = 3537178 | 0 (0.000) | coding (40/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | REL606 | 3537179 = | 0 (0.000) | 105 (1.200) +TTG |
51/74 | NT | 100% | coding (41/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | REL606 | 3651091 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 141 total aligned reads displayed.
CGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG > REL606/3537128‑3537227 | cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt > 1:10890930/1‑51 (MQ=255)cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt < 1:8280839/51‑1 (MQ=255)cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt < 1:931955/51‑1 (MQ=255)cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt > 1:2024992/1‑51 (MQ=255)cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt < 1:10527314/51‑1 (MQ=255)cGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAAt > 1:8240720/1‑51 (MQ=255) ggaggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAACCCCTCAATg < 1:6067301‑M2/51‑2 (MQ=255) gaggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgt < 1:9419919‑M2/51‑3 (MQ=255) gaggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgt > 1:3489236‑M2/1‑49 (MQ=255) gaggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgt < 1:9956372‑M2/51‑3 (MQ=255) aggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgta < 1:446010‑M2/51‑4 (MQ=255) aggaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgta > 1:8756496‑M2/1‑48 (MQ=255) gaTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtact > 1:10260738‑M2/1‑46 (MQ=255) aTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactg > 1:7143536‑M2/1‑45 (MQ=255) aTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactg < 1:9772226‑M2/51‑7 (MQ=255) aTGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactg > 1:7973878‑M2/1‑45 (MQ=255) gCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgac < 1:5280422‑M2/51‑9 (MQ=255) cATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccc < 1:5413873‑M2/51‑11 (MQ=255) cATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccc < 1:7013074‑M2/51‑11 (MQ=255) cATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccc > 1:5039772‑M2/1‑41 (MQ=255) cATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccc < 1:9131746‑M2/51‑11 (MQ=255) aTGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccc < 1:9334870‑M2/51‑12 (MQ=255) aTGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccc < 1:5249490‑M2/51‑12 (MQ=255) aTGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccc > 1:10632875‑M2/1‑40 (MQ=255) aTGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccc < 1:1404621‑M2/51‑12 (MQ=255) aTGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccc < 1:7758485‑M2/51‑12 (MQ=255) tGTCGCCTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactga > 1:4907343‑M2/1‑39 (MQ=255) gTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaa < 1:8859824‑M2/51‑14 (MQ=255) gTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaa < 1:1342280‑M2/51‑14 (MQ=255) gTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaa < 1:3715173‑M2/51‑14 (MQ=255) gTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgacccca > 1:6777194‑M2/1‑38 (MQ=255) tCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaa < 1:9335238‑M2/51‑15 (MQ=255) tCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaa > 1:3844638‑M2/1‑37 (MQ=255) cGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaa < 1:2323111‑M2/51‑16 (MQ=255) gACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaat > 1:7149230‑M2/1‑35 (MQ=255) gACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaat > 1:1484452‑M2/1‑35 (MQ=255) gACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaat < 1:5652769‑M2/51‑17 (MQ=255) gACTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaat < 1:4069828‑M2/51‑17 (MQ=255) aCTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatg < 1:2774619‑M2/51‑18 (MQ=255) aCTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatg < 1:8731168‑M2/51‑18 (MQ=255) cTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgt < 1:7361147‑M2/51‑19 (MQ=255) cTCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatg < 1:9548600‑M2/50‑18 (MQ=255) tCCTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgta < 1:1989183‑M2/51‑20 (MQ=255) cTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtact < 1:1339847‑M2/51‑22 (MQ=255) cTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtact > 1:3646139‑M2/1‑30 (MQ=255) cTGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtact > 1:4592469‑M2/1‑30 (MQ=255) tGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactg < 1:10048064‑M2/51‑23 (MQ=255) tGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactg > 1:6930926‑M2/1‑29 (MQ=255) tGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactg < 1:2133761‑M2/51‑23 (MQ=255) tGACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactg < 1:133699‑M2/51‑23 (MQ=255) gACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactga > 1:7879132‑M2/1‑28 (MQ=255) gACAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactg > 1:7152659‑M2/1‑28 (MQ=255) cAATCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacc < 1:1831518‑M2/51‑26 (MQ=255) aaTCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccc < 1:4616239‑M2/51‑27 (MQ=255) aaTCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccc < 1:733909‑M2/51‑27 (MQ=255) aTCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacccc > 1:5904699‑M2/1‑24 (MQ=255) aTCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacccc > 1:8568637‑M2/1‑24 (MQ=255) aTCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacccc > 1:8166234‑M2/1‑24 (MQ=255) tCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacccca > 1:8915683‑M2/1‑23 (MQ=255) tCACGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgacccca < 1:1686836‑M2/51‑29 (MQ=255) aCGGCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaa > 1:8228582‑M2/1‑21 (MQ=255) ggCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaa < 1:673712‑M2/51‑33 (MQ=255) ggCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaa > 1:4131671‑M2/1‑19 (MQ=255) gCAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaag > 1:5588614‑M2/1‑18 (MQ=255) cAAGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagt < 1:8426386‑M2/51‑35 (MQ=255) aaGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagtt < 1:1667783‑M2/51‑36 (MQ=255) aaGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagtt < 1:1395530‑M2/51‑36 (MQ=255) aGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttg < 1:3947045‑M2/51‑37 (MQ=255) aGAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagtt < 1:10275689‑M2/50‑36 (MQ=255) gAAAGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttgg > 1:6391473‑M2/1‑14 (MQ=255) aaGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttggac < 1:10244887‑M2/51‑40 (MQ=255) aaGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaaggtggac < 1:3632949‑M2/51‑40 (MQ=255) aGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttggaca < 1:4172863‑M2/51‑41 (MQ=255) aGCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttggaca > 1:5994249‑M2/1‑11 (MQ=255) gCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacag < 1:239003‑M2/51‑42 (MQ=255) gCCCCTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacag > 1:10868187‑M2/1‑10 (MQ=255) ccccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagt < 1:10614346‑M2/51‑43 (MQ=255) ccccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagt < 1:3033453‑M2/51‑43 (MQ=255) cccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtt > 1:9436214‑M2/1‑8 (MQ=255) ccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtta < 1:5882547‑M2/51‑45 (MQ=255) ccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtta > 1:2919089‑M2/1‑7 (MQ=255) ccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtta > 1:9542534‑M2/1‑7 (MQ=255) ccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtta > 1:8208190‑M2/1‑7 (MQ=255) ccTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagtta > 1:4765598‑M2/1‑7 (MQ=255) cTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa > 1:3591568‑M2/1‑6 (MQ=255) cTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa > 1:88725‑M2/1‑6 (MQ=255) cTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa < 1:5328825‑M2/51‑46 (MQ=255) cTCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa < 1:6419019‑M2/51‑46 (MQ=255) tCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaa > 1:9671114‑M2/1‑5 (MQ=255) tCAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaa > 1:1816790‑M2/1‑5 (MQ=255) cAATgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa < 1:9912600‑M2/49‑46 (MQ=255) aatgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaaca > 1:6576803‑M2/1‑3 (MQ=255) aatgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaaca < 1:1107491‑M2/51‑49 (MQ=255) aatgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaaca < 1:5266731‑M2/51‑49 (MQ=255) atgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaacac > 1:4405248‑M2/1‑2 (MQ=255) atgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaacac < 1:2795535‑M2/51‑50 (MQ=255) atgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaacac < 1:9815652‑M2/51‑50 (MQ=255) atgtactgaccccaaaatgtactgaccccaaaaagttggacagttaaacac > 1:8863657‑M2/1‑2 (MQ=255) tgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa < 1:6073842‑M2/46‑46 (MQ=255) tgtactgaccccaaaatgtactgaccccaaaaagttggacagttaa < 1:3314191‑M2/46‑46 (MQ=255) | CGGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTG > REL606/3537128‑3537227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |