| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | REL606 | 3,537,178 | +GTACTGACCCCAAAA :: IS150 (–) :: +CAA | 100% | coding (40/2199 nt) | zntA → | zinc, cobalt and lead efflux system |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 666133 | NA (NA) | 65 (0.990) +TGGGGTCAGTAC |
37/56 | NT | 100% | pseudogene (355/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 |
| ? | REL606 | = 3537178 | 0 (0.000) | coding (40/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | REL606 | 3537179 = | 0 (0.000) | 105 (1.200) +TTG |
51/74 | NT | 100% | coding (41/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | REL606 | 3651091 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 146 total aligned reads displayed.
GGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCT > REL606/3537129‑3537229 | attaggggctattccatttcatcgtccaacaaaatgggtgcagtacacaat > 1:8778825‑M1/51‑51 (MQ=255)attaggggctattccatttcatcgtccaacaaaatgggtgcagtacacaat > 1:3454309‑M1/51‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacacaatt > 1:7102325‑M1/50‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtg < 1:8742401‑M1/3‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtg < 1:5634710‑M1/3‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtg < 1:5449543‑M1/3‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtg < 1:9118896‑M1/3‑1 (MQ=255) aggggctattccatttcatcgtccaacgaaatgggtgcagtacacaaTtgc < 1:9535858‑M1/4‑1 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacacaatt < 1:8649694‑M1/2‑1 (MQ=255) ggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgct < 1:10494552‑M1/5‑1 (MQ=255) ggggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgct > 1:4593727‑M1/47‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctg < 1:7335011‑M1/6‑1 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctg > 1:7875622‑M1/46‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctg > 1:4530193‑M1/46‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctg < 1:6457421‑M1/6‑1 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctgc > 1:4884367‑M1/45‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacacaaTtgctgc < 1:2610878‑M1/7‑1 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCg > 1:1327011‑M1/44‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGt < 1:7778876‑M1/9‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGtt < 1:1916091‑M1/10‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGtt > 1:4563677‑M1/42‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGtt > 1:5648552‑M1/42‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGtt > 1:1300892‑M1/42‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTc > 1:4033393‑M1/41‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCa > 1:2916184‑M1/40‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGt > 1:10899388‑M1/39‑47 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaa > 1:4175017‑M1/39‑51 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaaa < 1:2627140‑M1/14‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaaa > 1:8382718‑M1/38‑51 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaaa < 1:9267617‑M1/14‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaaa < 1:2234398‑M1/14‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCaaa > 1:8191603‑M1/38‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAAc > 1:1583395‑M1/37‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAAcc < 1:5941260‑M1/16‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAAcc > 1:8108779‑M1/36‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAAcc < 1:5076185‑M1/16‑1 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCg < 1:2199350‑M1/17‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGc < 1:5362587‑M1/18‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGc < 1:6334870‑M1/18‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGc < 1:10263330‑M1/18‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCt > 1:7821573‑M1/33‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCt > 1:6742257‑M1/33‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCt < 1:1358838‑M1/19‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCt > 1:2114883‑M1/33‑51 (MQ=255) catcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTa < 1:8586373‑M1/20‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTa < 1:2600258‑M1/20‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTaa > 1:9288982‑M1/31‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAACCCGCTAAc < 1:1499571‑M1/22‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAAc < 1:1169224‑M1/22‑1 (MQ=255) tcgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAAc > 1:9439704‑M1/30‑51 (MQ=255) cgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAAcc < 1:1162814‑M1/23‑1 (MQ=255) cgtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAAcc < 1:5392971‑M1/23‑1 (MQ=255) gtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCa < 1:6588922‑M1/24‑1 (MQ=255) gtccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCa < 1:7231553‑M1/24‑1 (MQ=255) ccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACg > 1:4293166‑M1/26‑51 (MQ=255) ccaacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACg < 1:8794273‑M1/26‑1 (MQ=255) caacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACgg < 1:3026789‑M1/27‑1 (MQ=255) caacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACgg < 1:5742454‑M1/27‑1 (MQ=255) caacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACgg < 1:3698924‑M1/27‑1 (MQ=255) aacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGt > 1:7977404‑M1/24‑51 (MQ=255) aacaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGt < 1:6095220‑M1/28‑1 (MQ=255) acaaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTa > 1:8211692‑M1/23‑51 (MQ=255) caaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTAc < 1:7589165‑M1/30‑1 (MQ=255) caaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTAc < 1:2316828‑M1/30‑1 (MQ=255) aaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACa < 1:9110809‑M1/31‑1 (MQ=255) aaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACa < 1:8987026‑M1/31‑1 (MQ=255) aaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACa > 1:3395700‑M1/21‑51 (MQ=255) aaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACa < 1:3487695‑M1/31‑1 (MQ=255) aaaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACa > 1:3952249‑M1/21‑51 (MQ=255) aaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAg < 1:10307522‑M1/32‑1 (MQ=255) aaatgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAg > 1:1477156‑M1/20‑51 (MQ=255) atgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGaa > 1:9914066‑M1/18‑51 (MQ=255) tgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAc < 1:3390405‑M1/35‑1 (MQ=255) tgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAc > 1:687592‑M1/17‑51 (MQ=255) tgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAc < 1:9842043‑M1/35‑1 (MQ=255) tgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAc > 1:26496‑M1/17‑51 (MQ=255) tgggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAAc > 1:185807‑M1/17‑51 (MQ=255) ggtgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGc < 1:10402265‑M1/37‑1 (MQ=255) tgcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCa > 1:5099978‑M1/13‑51 (MQ=255) gcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCaa < 1:5556377‑M1/40‑1 (MQ=255) gcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCaa < 1:7551646‑M1/40‑1 (MQ=255) gcagtacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCaa < 1:1959689‑M1/40‑1 (MQ=255) tacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGAc > 1:8386278‑M1/8‑51 (MQ=255) tacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGAc < 1:10335164‑M1/44‑1 (MQ=255) tacacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGAc > 1:4012898‑M1/8‑51 (MQ=255) acacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACt < 1:5762515‑M1/45‑1 (MQ=255) acacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACt < 1:7434556‑M1/45‑1 (MQ=255) cacaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTg > 1:114127‑M1/6‑51 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt > 1:9048217‑M1/5‑51 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt < 1:3929593‑M1/47‑1 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt > 1:6809231‑M1/5‑51 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt < 1:8642075‑M1/47‑1 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt < 1:8600472‑M1/47‑1 (MQ=255) acaaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGt < 1:483689‑M1/47‑1 (MQ=255) caaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGtt < 1:5590812‑M1/48‑1 (MQ=255) caaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGtt < 1:10211454‑M1/48‑1 (MQ=255) aaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTg < 1:10490029‑M1/49‑1 (MQ=255) aaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTg < 1:2540025‑M1/49‑1 (MQ=255) aaTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTg < 1:4156906‑M1/49‑1 (MQ=255) aTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGc < 1:6151295‑M1/50‑1 (MQ=255) | GGAGGATGCCATGTCGACTCCTGACAATCACGGCAAGAAAGCCCCTCAATTTGCTGCGTTCAAACCGCTAACCACGGTACAGAACGCCAACGACTGTTGCT > REL606/3537129‑3537229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |