| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 83 [0] | [0] 143 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 67 (0.720) | 47/78 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 96 (1.070) | 55/76 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 139 total aligned reads displayed.
CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397592‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < REL606/2775877‑2775829 CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT > 1:9030168/1‑51CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT < 1:51920/51‑1CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT < 1:1543456/51‑1 TCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATG < 1:7603029/51‑1 TCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATG < 1:9694137/51‑1 TCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATG < 1:6586252/51‑1 CGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGT < 1:2379849/51‑1 GATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTA < 1:10355804/51‑1 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC > 1:3065887/1‑51 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC < 1:6531245/51‑1 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT > 1:7230859/1‑51 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT < 1:6545857/51‑1 TGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACT < 1:7203907/51‑1 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG < 1:188041/51‑1 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:5632449/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:2207184/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:2154949/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG > 1:9534677/1‑51 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG < 1:8462763/51‑1 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:3400327/1‑51 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:3680341/1‑51 CCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGC > 1:2463858/1‑51 CATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCA < 1:3081149/51‑1 CATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCA > 1:10837628/1‑51 ATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCAC > 1:9261251/1‑51 ATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCAC < 1:2985948/51‑1 CCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCA < 1:3068961/51‑1 CTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCAT < 1:5680925/51‑1 CTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCAT < 1:9099499/51‑1 TTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATT > 1:4698038/1‑51 TTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATT > 1:8755195/1‑51 TACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTT < 1:8022925/51‑1 TACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTT < 1:5227550/51‑1 TACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTT < 1:9343494/51‑1 ACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTT < 1:10937566/51‑1 CTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTG > 1:1358180/1‑51 TCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGT > 1:9916934/1‑51 CGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTT < 1:4464321/51‑1 CGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTT > 1:10273077/1‑51 GCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTG < 1:6930257/51‑1 GCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTG < 1:5278892/51‑1 GCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTG > 1:8804099/1‑51 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG > 1:4368799/1‑51 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:5443100/51‑1 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG > 1:10174262/1‑51 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:8507241/51‑1 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:8730548/51‑1 CCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGG < 1:4970785/51‑1 CCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGA < 1:4352034/51‑1 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC < 1:5461063/51‑1 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC > 1:3530755/1‑51 CAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGAC < 1:6219303/51‑1 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG > 1:479060/1‑51 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACG > 1:10177518/1‑51 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATG < 1:10054382/51‑1 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATG > 1:7851442/1‑51 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATG > 1:5413801/1‑51 CCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATG < 1:10502837/51‑1 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA > 1:9730316/1‑51 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA > 1:6753704/1‑51 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA > 1:1340649/1‑51 CAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGA < 1:4284199/51‑1 AGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAA < 1:5078254/51‑1 AGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAA < 1:8025993/51‑1 AGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAA > 1:10684794/1‑51 GGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAA < 1:9952196/51‑1 GTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAAT < 1:2071547/51‑1 GTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAAT < 1:2915369/51‑1 TCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:7396290/1‑51 TCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:2826688/1‑51 CGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 1:10371352/1‑51 GTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:8417875/51‑1 GTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:448989/51‑1 TTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:10218646/51‑1 TTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:1831320/1‑51 TTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:4497130/1‑51 TATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:8302290/51‑1 ATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:3218804/51‑1 TAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 1:2642653/51‑1 TAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:2619603/1‑51 TAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:10478454/1‑51 AAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC > 1:7282360/1‑51 AAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:3976225/1‑51 AGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC < 1:1518845/51‑1 AGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:9082168/1‑51 GTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 1:9203639/51‑1 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 1:4013904/1‑51 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 1:1855521/1‑51 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4675171/51‑1 TCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4887213/51‑1 CATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:8259512/1‑51 CATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 1:10212578/51‑1 CATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:3401355/1‑51 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:10562764/51‑1 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:8765854/51‑1 TGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:325100/51‑1 TGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:4245245/51‑1 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:5257687/1‑51 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:6505409/1‑51 GATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT > 1:6930783/1‑51 CTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397592‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < REL606/2775877‑2775829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |