Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC JC REL606 2,397,529 IS150 (–) Δ14 bp 100% coding (1124‑1137/2646 nt) yfcTU ← predicted outer membrane export usher protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 2397529 2397542 14 83 [0] [0] 143 yfcTU predicted outer membrane export usher protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 23975280 (0.000)67 (0.720) 47/78 NT 100% coding (1138/2646 nt) yfcTU predicted outer membrane export usher protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region
* ? REL606 2397543 =0 (0.000)96 (1.070) 55/76 NT 100% coding (1123/2646 nt) yfcTU predicted outer membrane export usher protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 143 total aligned reads displayed.

GAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGG  >  REL606/2397494‑2397593
                                                 |                                                  
atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc                                                   >  1:6930783‑M1/50‑51 (MQ=255)
atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc                                                   >  1:5257687‑M1/50‑51 (MQ=255)
atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc                                                   <  1:10920571‑M1/2‑1 (MQ=255)
 tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca                                                  <  1:4245245‑M1/3‑1 (MQ=255)
 tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca                                                  <  1:325100‑M1/3‑1 (MQ=255)
 tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca                                                  <  1:2865395‑M1/3‑1 (MQ=255)
  attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat                                                 <  1:8765854‑M1/4‑1 (MQ=255)
  attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat                                                 <  1:5236926‑M1/4‑1 (MQ=255)
  attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat                                                 >  1:1478925‑M1/48‑51 (MQ=255)
  attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat                                                 >  1:4644089‑M1/48‑51 (MQ=255)
   ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATg                                                <  1:10212578‑M1/5‑1 (MQ=255)
   ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATg                                                >  1:8259512‑M1/47‑51 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               <  1:4675171‑M1/6‑1 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               <  1:4887213‑M1/6‑1 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               <  1:10459951‑M1/6‑1 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               >  1:1855521‑M1/46‑51 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               >  1:4013904‑M1/46‑51 (MQ=255)
    taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa                                               >  1:10660354‑M1/46‑51 (MQ=255)
     aggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGAc                                              <  1:9203639‑M1/7‑1 (MQ=255)
     aggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGAc                                              <  1:1634502‑M1/7‑1 (MQ=255)
      ggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACt                                             <  1:1518845‑M1/8‑1 (MQ=255)
       gggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACtt                                            >  1:3976225‑M1/43‑51 (MQ=255)
       gggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACtt                                            >  1:9506456‑M1/43‑51 (MQ=255)
        ggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACttt                                           >  1:7282360‑M1/42‑51 (MQ=255)
         gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta                                          >  1:10478454‑M1/41‑51 (MQ=255)
         gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta                                          >  1:2619603‑M1/41‑51 (MQ=255)
          ctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtat                                         >  1:92604‑M1/40‑51 (MQ=255)
          ctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtat                                         <  1:433880‑M1/12‑1 (MQ=255)
           tattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtata                                        >  1:3055194‑M1/39‑51 (MQ=255)
            attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa                                       <  1:10218646‑M1/14‑1 (MQ=255)
            attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa                                       >  1:1831320‑M1/38‑51 (MQ=255)
            attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa                                       >  1:4497130‑M1/38‑51 (MQ=255)
             ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc                                      <  1:448989‑M1/15‑1 (MQ=255)
             ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc                                      <  1:8417875‑M1/15‑1 (MQ=255)
             ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc                                      <  1:3334985‑M1/15‑1 (MQ=255)
               ccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGa                                    >  1:2826688‑M1/35‑51 (MQ=255)
               ccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGa                                    >  1:7396290‑M1/35‑51 (MQ=255)
                 atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc                                  >  1:8193999‑M1/33‑51 (MQ=255)
                 atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc                                  <  1:2915369‑M1/19‑1 (MQ=255)
                 atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc                                  <  1:2071547‑M1/19‑1 (MQ=255)
                  tttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcc                                 <  1:9952196‑M1/20‑1 (MQ=255)
                   ttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct                                <  1:5078254‑M1/21‑1 (MQ=255)
                   ttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct                                >  1:10684794‑M1/31‑51 (MQ=255)
                    tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg                               >  1:9730316‑M1/30‑51 (MQ=255)
                    tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg                               <  1:4284199‑M1/22‑1 (MQ=255)
                    tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg                               >  1:6753704‑M1/30‑51 (MQ=255)
                     catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg                              <  1:10502837‑M1/23‑1 (MQ=255)
                     catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg                              <  1:10054382‑M1/23‑1 (MQ=255)
                     catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg                              >  1:7851442‑M1/29‑51 (MQ=255)
                     catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg                              >  1:5413801‑M1/29‑51 (MQ=255)
                      atcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc                             >  1:5350372‑M1/28‑51 (MQ=255)
                      atcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc                             >  1:8776848‑M1/28‑51 (MQ=255)
                        cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct                           >  1:10177518‑M1/26‑51 (MQ=255)
                        cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct                           >  1:4879448‑M1/26‑51 (MQ=255)
                        cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct                           <  1:5021520‑M1/26‑1 (MQ=255)
                         gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg                          >  1:3530755‑M1/25‑51 (MQ=255)
                         gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg                          <  1:6219303‑M1/27‑1 (MQ=255)
                         gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg                          <  1:5461063‑M1/27‑1 (MQ=255)
                           ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg                        >  1:4368799‑M1/23‑51 (MQ=255)
                           ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg                        <  1:8507241‑M1/29‑1 (MQ=255)
                           ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg                        <  1:8730548‑M1/29‑1 (MQ=255)
                           ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg                        >  1:10174262‑M1/23‑51 (MQ=255)
                            caacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGc                       <  1:6930257‑M1/30‑1 (MQ=255)
                             aacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCg                      <  1:4464321‑M1/31‑1 (MQ=255)
                              acaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGa                     >  1:9916934‑M1/20‑51 (MQ=255)
                               caaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAg                    >  1:1358180‑M1/19‑51 (MQ=255)
                                aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAg                    <  1:6534968‑M1/33‑1 (MQ=255)
                                aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt                   <  1:3587211‑M1/34‑1 (MQ=255)
                                aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt                   <  1:10937566‑M1/34‑1 (MQ=255)
                                aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt                   <  1:9071000‑M1/34‑1 (MQ=255)
                                 aaatgggtgcagtacaTCATGACTTTATAACGAAcctgg                              <  1:2309520‑M1/23‑1 (MQ=255)
                                 aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa                  <  1:5227550‑M1/35‑1 (MQ=255)
                                 aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa                  <  1:8022925‑M1/35‑1 (MQ=255)
                                 aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa                  <  1:9343494‑M1/35‑1 (MQ=255)
                                  aatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa                 >  1:4698038‑M1/16‑51 (MQ=255)
                                  aatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa                 <  1:3144463‑M1/36‑1 (MQ=255)
                                   atgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAg                <  1:5680925‑M1/37‑1 (MQ=255)
                                   atgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAg                <  1:9099499‑M1/37‑1 (MQ=255)
                                    tgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAgg               <  1:2503288‑M1/38‑1 (MQ=255)
                                        tgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATg           <  1:3081149‑M1/42‑1 (MQ=255)
                                         gcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATgg          >  1:3400327‑M1/9‑51 (MQ=255)
                                          cagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc         <  1:188041‑M1/44‑1 (MQ=255)
                                          cagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc         >  1:2154949‑M1/8‑51 (MQ=255)
                                           agtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCa        >  1:7230859‑M1/7‑51 (MQ=255)
                                            gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt       <  1:6531245‑M1/46‑1 (MQ=255)
                                            gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt       >  1:3065887‑M1/6‑51 (MQ=255)
                                            gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt       >  1:84278‑M1/6‑51 (MQ=255)
                                             tacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATc      <  1:10355804‑M1/47‑1 (MQ=255)
                                              acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg     <  1:6367150‑M1/48‑1 (MQ=255)
                                              acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg     <  1:2379849‑M1/48‑1 (MQ=255)
                                              acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg     <  1:5600665‑M1/48‑1 (MQ=255)
                                               caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa    <  1:6586252‑M1/49‑1 (MQ=255)
                                               caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa    <  1:10304228‑M1/49‑1 (MQ=255)
                                               caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa    <  1:7603029‑M1/49‑1 (MQ=255)
                                               caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa    <  1:9694137‑M1/49‑1 (MQ=255)
                                               caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa    <  1:8568060‑M1/49‑1 (MQ=255)
                                                aTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAg   >  1:9030168‑M1/2‑51 (MQ=255)
                                                aTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAg   >  1:6941182‑M1/2‑51 (MQ=255)
                                                 tcatGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAgg  >  1:2011189/1‑51 (MQ=255)
                                                 tcatGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAgg  <  1:7853444/51‑1 (MQ=255)
                                                 |                                                  
GAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGG  >  REL606/2397494‑2397593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.