Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 83 [0] | [0] 143 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 67 (0.720) | 47/78 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 96 (1.070) | 55/76 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 143 total aligned reads displayed.
GAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGG > REL606/2397494‑2397593 | atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc > 1:6930783‑M1/50‑51 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc > 1:5257687‑M1/50‑51 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatc < 1:10920571‑M1/2‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca < 1:4245245‑M1/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca < 1:325100‑M1/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca < 1:2865395‑M1/3‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat < 1:8765854‑M1/4‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat < 1:5236926‑M1/4‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat > 1:1478925‑M1/48‑51 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacatcat > 1:4644089‑M1/48‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATg < 1:10212578‑M1/5‑1 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATg > 1:8259512‑M1/47‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa < 1:4675171‑M1/6‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa < 1:4887213‑M1/6‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa < 1:10459951‑M1/6‑1 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa > 1:1855521‑M1/46‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa > 1:4013904‑M1/46‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGa > 1:10660354‑M1/46‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGAc < 1:9203639‑M1/7‑1 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGAc < 1:1634502‑M1/7‑1 (MQ=255) ggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACt < 1:1518845‑M1/8‑1 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACtt > 1:3976225‑M1/43‑51 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACtt > 1:9506456‑M1/43‑51 (MQ=255) ggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACttt > 1:7282360‑M1/42‑51 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta > 1:10478454‑M1/41‑51 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta > 1:2619603‑M1/41‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtat > 1:92604‑M1/40‑51 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtat < 1:433880‑M1/12‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtata > 1:3055194‑M1/39‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa < 1:10218646‑M1/14‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa > 1:1831320‑M1/38‑51 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa > 1:4497130‑M1/38‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc < 1:448989‑M1/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc < 1:8417875‑M1/15‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc < 1:3334985‑M1/15‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGa > 1:2826688‑M1/35‑51 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGa > 1:7396290‑M1/35‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc > 1:8193999‑M1/33‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc < 1:2915369‑M1/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc < 1:2071547‑M1/19‑1 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcc < 1:9952196‑M1/20‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct < 1:5078254‑M1/21‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct > 1:10684794‑M1/31‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg > 1:9730316‑M1/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg < 1:4284199‑M1/22‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg > 1:6753704‑M1/30‑51 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg < 1:10502837‑M1/23‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg < 1:10054382‑M1/23‑1 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg > 1:7851442‑M1/29‑51 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctgg > 1:5413801‑M1/29‑51 (MQ=255) atcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc > 1:5350372‑M1/28‑51 (MQ=255) atcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc > 1:8776848‑M1/28‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct > 1:10177518‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct > 1:4879448‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct < 1:5021520‑M1/26‑1 (MQ=255) gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg > 1:3530755‑M1/25‑51 (MQ=255) gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg < 1:6219303‑M1/27‑1 (MQ=255) gtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg < 1:5461063‑M1/27‑1 (MQ=255) ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg > 1:4368799‑M1/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg < 1:8507241‑M1/29‑1 (MQ=255) ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg < 1:8730548‑M1/29‑1 (MQ=255) ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg > 1:10174262‑M1/23‑51 (MQ=255) caacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGc < 1:6930257‑M1/30‑1 (MQ=255) aacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCg < 1:4464321‑M1/31‑1 (MQ=255) acaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGa > 1:9916934‑M1/20‑51 (MQ=255) caaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAg > 1:1358180‑M1/19‑51 (MQ=255) aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAg < 1:6534968‑M1/33‑1 (MQ=255) aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt < 1:3587211‑M1/34‑1 (MQ=255) aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt < 1:10937566‑M1/34‑1 (MQ=255) aaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt < 1:9071000‑M1/34‑1 (MQ=255) aaatgggtgcagtacaTCATGACTTTATAACGAAcctgg < 1:2309520‑M1/23‑1 (MQ=255) aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa < 1:5227550‑M1/35‑1 (MQ=255) aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa < 1:8022925‑M1/35‑1 (MQ=255) aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTa < 1:9343494‑M1/35‑1 (MQ=255) aatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa > 1:4698038‑M1/16‑51 (MQ=255) aatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa < 1:3144463‑M1/36‑1 (MQ=255) atgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAg < 1:5680925‑M1/37‑1 (MQ=255) atgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAg < 1:9099499‑M1/37‑1 (MQ=255) tgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAgg < 1:2503288‑M1/38‑1 (MQ=255) tgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATg < 1:3081149‑M1/42‑1 (MQ=255) gcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATgg > 1:3400327‑M1/9‑51 (MQ=255) cagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc < 1:188041‑M1/44‑1 (MQ=255) cagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGc > 1:2154949‑M1/8‑51 (MQ=255) agtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCa > 1:7230859‑M1/7‑51 (MQ=255) gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt < 1:6531245‑M1/46‑1 (MQ=255) gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 1:3065887‑M1/6‑51 (MQ=255) gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 1:84278‑M1/6‑51 (MQ=255) tacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATc < 1:10355804‑M1/47‑1 (MQ=255) acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg < 1:6367150‑M1/48‑1 (MQ=255) acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg < 1:2379849‑M1/48‑1 (MQ=255) acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg < 1:5600665‑M1/48‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:6586252‑M1/49‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:10304228‑M1/49‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:7603029‑M1/49‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:9694137‑M1/49‑1 (MQ=255) caTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:8568060‑M1/49‑1 (MQ=255) aTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAg > 1:9030168‑M1/2‑51 (MQ=255) aTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAg > 1:6941182‑M1/2‑51 (MQ=255) tcatGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAgg > 1:2011189/1‑51 (MQ=255) tcatGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAgg < 1:7853444/51‑1 (MQ=255) | GAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGG > REL606/2397494‑2397593 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |