Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC JC REL606 2,397,529 IS150 (–) Δ14 bp 100% coding (1124‑1137/2646 nt) yfcTU ← predicted outer membrane export usher protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 2397529 2397542 14 83 [0] [0] 143 yfcTU predicted outer membrane export usher protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 23975280 (0.000)67 (0.720) 47/78 NT 100% coding (1138/2646 nt) yfcTU predicted outer membrane export usher protein
?REL606 2774435 = NA (NA)noncoding (1443/1443 nt) IS150 repeat region
* ? REL606 2397543 =0 (0.000)96 (1.070) 55/76 NT 100% coding (1123/2646 nt) yfcTU predicted outer membrane export usher protein
?REL606 = 2775877 NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 148 total aligned reads displayed.

AAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT  >  REL606/2774385‑2774481
                                                  |                                              
aagaagAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                                >  1:7651139/1‑51 (MQ=255)
aagaagAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                                >  1:6395412/1‑51 (MQ=255)
aagaagAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                                <  1:10635529/51‑1 (MQ=255)
aagaagAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                                <  1:2405509/51‑1 (MQ=255)
aagaagAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                                >  1:8499324/1‑51 (MQ=255)
  gaagaGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGt                                              <  1:10838678/51‑1 (MQ=255)
   aagaGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                             <  1:4759074/51‑1 (MQ=255)
   aagaGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                                             <  1:2707023/51‑1 (MQ=255)
    agagACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                            >  1:716142/1‑51 (MQ=255)
    agagACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                            <  1:5334111/51‑1 (MQ=255)
    agagACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                            >  1:8431148/1‑51 (MQ=255)
    agagACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                            <  1:6773118/51‑1 (MQ=255)
    agagACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                                            >  1:2337729/1‑51 (MQ=255)
      agaCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                                          <  1:5721692/51‑1 (MQ=255)
      agaCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                                          <  1:5460292/51‑1 (MQ=255)
        aCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                                        >  1:5542942/1‑51 (MQ=255)
        aCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                                        >  1:2576192/1‑51 (MQ=255)
        aCTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                                        >  1:9603306/1‑51 (MQ=255)
         cTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                                       >  1:4127258/1‑51 (MQ=255)
         cTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                                       >  1:4400325/1‑51 (MQ=255)
         cTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                                       >  1:3895151/1‑51 (MQ=255)
         cTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAcc                                       >  1:5520896/1‑51 (MQ=255)
          tAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                                      <  1:8557602/51‑1 (MQ=255)
          tAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                                      >  1:182884/1‑51 (MQ=255)
           aaCATTCGAATTGTTTGGGTTCGAATGTAAGCCTCAGGTTGTACTGAcccc                                     <  1:3991629/51‑1 (MQ=255)
            aCATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                                    <  1:9553494/51‑1 (MQ=255)
            aCATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                                    <  1:5067138/51‑1 (MQ=255)
            aCATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                                    >  1:5139153/1‑51 (MQ=255)
             cATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                                   >  1:2278890/1‑51 (MQ=255)
             cATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                                   <  1:8232955/51‑1 (MQ=255)
              aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                                  >  1:8767117/1‑51 (MQ=255)
              aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                                  <  1:10168681/51‑1 (MQ=255)
              aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                                  >  1:1858178/1‑51 (MQ=255)
              aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaa                                  >  1:7095357/1‑51 (MQ=255)
               ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                                 <  1:3071956/51‑1 (MQ=255)
                tCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                                >  1:1487697/1‑51 (MQ=255)
                tCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                                <  1:2896167/51‑1 (MQ=255)
                  gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt                              >  1:8026794/1‑51 (MQ=255)
                   aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt                             <  1:2343085/51‑1 (MQ=255)
                    aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg                            >  1:3830453/1‑51 (MQ=255)
                    aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg                            <  1:5795131/51‑1 (MQ=255)
                     ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg                           >  1:9354553/1‑51 (MQ=255)
                     ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg                           >  1:1208542/1‑51 (MQ=255)
                     ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg                           <  1:9753251/51‑1 (MQ=255)
                      tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa                          <  1:5975176/51‑1 (MQ=255)
                      tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa                          >  1:5592552/1‑51 (MQ=255)
                       gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc                         >  1:9024226/1‑51 (MQ=255)
                       gTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc                         >  1:1929698/1‑51 (MQ=255)
                        tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa                        >  1:6721510/1‑51 (MQ=255)
                        tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa                        <  1:4034207/51‑1 (MQ=255)
                        tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa                        <  1:3894673/51‑1 (MQ=255)
                        tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa                        >  1:8080184/1‑51 (MQ=255)
                        tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa                        >  1:616195/1‑51 (MQ=255)
                         ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCCAAAAGTTGGACAg                       <  1:4825652/51‑1 (MQ=255)
                         ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg                       >  1:4262876/1‑51 (MQ=255)
                         ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg                       >  1:10104561/1‑51 (MQ=255)
                         ttGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg                       <  1:9125894/51‑1 (MQ=255)
                          tGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg                       >  1:190699/1‑50 (MQ=255)
                          tGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt                      >  1:645393/1‑51 (MQ=255)
                          tGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt                      <  1:8409836/51‑1 (MQ=255)
                           gggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt                     >  1:9283807/1‑51 (MQ=255)
                            ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa                    <  1:3859744/51‑1 (MQ=255)
                            ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa                    <  1:10568029/51‑1 (MQ=255)
                             gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa                   <  1:10807493/51‑1 (MQ=255)
                             gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa                   >  1:3629093/1‑51 (MQ=255)
                              ttCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa                  >  1:3607000/1‑51 (MQ=255)
                              ttCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa                  <  1:376371/51‑1 (MQ=255)
                               tCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac                 <  1:4792728/51‑1 (MQ=255)
                               tCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac                 >  1:626252/1‑51 (MQ=255)
                               tCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac                 >  1:9431299/1‑51 (MQ=255)
                               tCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAac                 >  1:5348125/1‑51 (MQ=255)
                                cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca                <  1:3285349/51‑1 (MQ=255)
                                cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca                <  1:1258096/51‑1 (MQ=255)
                                cGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAaca                >  1:8579662/1‑51 (MQ=255)
                                 gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAacac               >  1:9569071/1‑51 (MQ=255)
                                  aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg              <  1:7653755/51‑1 (MQ=255)
                                  aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg              <  1:3789880/51‑1 (MQ=255)
                                  aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACg              <  1:4110409/51‑1 (MQ=255)
                                   aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa             <  1:10284625/51‑1 (MQ=255)
                                   aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa             >  1:9330419/1‑51 (MQ=255)
                                   aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGa             <  1:8784297/51‑1 (MQ=255)
                                    cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg            <  1:5917008/51‑1 (MQ=255)
                                    cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg            <  1:5802637/51‑1 (MQ=255)
                                     gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAgg           >  1:2939214/1‑51 (MQ=255)
                                     gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAg            <  1:7061678/50‑1 (MQ=255)
                                       aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCa         >  1:10020723/1‑51 (MQ=255)
                                       aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCa         >  1:7418283/1‑51 (MQ=255)
                                        aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCat        >  1:686151/1‑51 (MQ=255)
                                         gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCata       <  1:4629337/51‑1 (MQ=255)
                                         gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCata       <  1:2154404/51‑1 (MQ=255)
                                          ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCatat      <  1:1609909/51‑1 (MQ=255)
                                           cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAtata     >  1:4302608/1‑51 (MQ=40)
                                           cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAtata     >  1:5394407/1‑51 (MQ=40)
                                           cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAtata     >  1:3030606/1‑51 (MQ=40)
                                            tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAg    >  1:4359272/1‑51 (MQ=38)
                                            tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAg    <  1:3413899/51‑1 (MQ=40)
                                            tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAg    >  1:1511038/1‑51 (MQ=38)
                                             cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAgg   <  1:5224296/51‑1 (MQ=35)
                                              aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt  >  1:1615183/1‑51 (MQ=35)
                                              aGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGt  >  1:10278842/1‑51 (MQ=35)
                                                  |                                              
AAGAAGAGACTAACATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT  >  REL606/2774385‑2774481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.