| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | REL606 | 1,354,425 | IS150 (–) +3 bp | 100% | coding (1053‑1055/1644 nt) | sapA ← | predicted antimicrobial peptide transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 76 (0.800) | 50/80 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 1354425 = | 0 (0.000) | coding (1055/1644 nt) | sapA | predicted antimicrobial peptide transporter subunit | |||||
| * | ? | REL606 | = 666130 | NA (NA) | 98 (1.060) | 54/78 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 1354427 | 0 (0.000) | coding (1053/1644 nt) | sapA | predicted antimicrobial peptide transporter subunit | |||||
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664733‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGC > REL606/1354425‑1354474 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTC > 1:1779611/1‑51TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTC < 1:532359/51‑1TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTC > 1:7501462/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCA > 1:3891420/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCA > 1:7228271/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCA > 1:3464636/1‑51 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCAT > 1:3153340/1‑51 GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATA < 1:6390739/51‑1 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAG > 1:2060473/1‑51 GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAG < 1:370404/51‑1 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGG < 1:222269/51‑1 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGG < 1:2492327/51‑1 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGG < 1:4955647/51‑1 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGC > 1:5044745/1‑51 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGC < 1:3054948/51‑1 GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGC < 1:533851/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCC < 1:3573756/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCC < 1:6939795/51‑1 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCC > 1:6611351/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCA < 1:8885101/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCA < 1:8104010/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCA < 1:5828507/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCA < 1:6477059/51‑1 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCAC > 1:8549654/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACG > 1:965538/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACG > 1:529053/1‑51 CCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGA < 1:8190076/51‑1 CCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGA > 1:943380/1‑51 ATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGG > 1:9077511/1‑51 ATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAG > 1:1125002/1‑50 TTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGC > 1:6445001/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGC > 1:5943965/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGC < 1:1891893/51‑1 TTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCG < 1:2919674/51‑1 TTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCG > 1:8372239/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCG > 1:7779158/1‑51 TCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGC > 1:3280954/1‑51 TCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGC < 1:5608448/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGC < 1:615595/51‑1 ATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGC < 1:3644689/51‑1 TCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCG < 1:1755977/51‑1 TCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCG < 1:10769776/51‑1 CGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGG < 1:7436843/51‑1 GTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGT > 1:6354751/1‑51 GTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGT < 1:1737640/51‑1 GTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGT > 1:5171413/1‑51 GTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGG > 1:3876710/1‑50 TCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTA > 1:9563864/1‑51 CCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAA > 1:2969226/1‑51 CCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAA < 1:4231574/51‑1 CAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAA < 1:6897361/51‑1 CAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAA < 1:9590799/51‑1 CAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAA > 1:7506553/1‑51 AACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAA > 1:3408061/1‑51 CAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATA < 1:7148003/51‑1 CAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATA > 1:2611600/1‑51 AAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAG > 1:19883/1‑51 AAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAG < 1:8471880/51‑1 AAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAG < 1:5126857/51‑1 AAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGA < 1:9577376/51‑1 AATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAG > 1:7761478/1‑51 ATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGG < 1:1944028/51‑1 TGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGC > 1:6578516/1‑51 TGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGC < 1:4635656/51‑1 GGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCC > 1:10218943/1‑51 GGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCC < 1:1774255/51‑1 GGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCC < 1:8052308/51‑1 GGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCC < 1:5448745/51‑1 GGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCG < 1:10380001/51‑1 GTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGC > 1:9400748/1‑51 GTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGC > 1:7048144/1‑51 TGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCC > 1:5506528/1‑51 TGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCC < 1:8748365/51‑1 TGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCC < 1:2908925/51‑1 TGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCC > 1:1854012/1‑51 CAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGT > 1:7605068/1‑51 CAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGT > 1:7233454/1‑51 CAGTACATTGTCATAGGCCCACGAGGCGCCCGGTAATATAGAGGCCGCCGT > 1:7303525/1‑51 AGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTT > 1:1297717/1‑51 GTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTT < 1:8932808/51‑1 GTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTT < 1:10465634/51‑1 GTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTT < 1:1506697/51‑1 TACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTC < 1:1903248/51‑1 TACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTC > 1:2476503/1‑51 TACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTC > 1:5984146/1‑51 TACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTC > 1:6880532/1‑51 ACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA < 1:8931829/51‑1 ACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA < 1:5609739/51‑1 ACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA > 1:10362799/1‑51 ACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA < 1:191482/51‑1 CATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA < 1:8875781/50‑1 ATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTTAGC > 1:8438331/1‑51 ATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGC > 1:10887416/1‑51 ATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGC < 1:8731266/51‑1 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664733‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGC > REL606/1354425‑1354474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |