Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC JC | REL606 | 1,354,425 | IS150 (–) +3 bp | 100% | coding (1053‑1055/1644 nt) | sapA ← | predicted antimicrobial peptide transporter subunit |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 76 (0.800) | 50/80 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 1354425 = | 0 (0.000) | coding (1055/1644 nt) | sapA | predicted antimicrobial peptide transporter subunit | |||||
* | ? | REL606 | = 666130 | NA (NA) | 98 (1.060) | 54/78 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | = 1354427 | 0 (0.000) | coding (1053/1644 nt) | sapA | predicted antimicrobial peptide transporter subunit |
Only 100 of 132 total aligned reads displayed.
GCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > REL606/664638‑664734 | gcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGtttt < 1:7737717/51‑1 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt > 1:1346673/1‑51 (MQ=255) ggAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTa > 1:7564617/1‑51 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg > 1:3179947/1‑51 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg > 1:5930927/1‑51 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTg < 1:7311820/51‑1 (MQ=255) aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc > 1:7654488/1‑51 (MQ=255) aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGc > 1:7248628/1‑51 (MQ=255) cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa > 1:5809229/1‑51 (MQ=255) cTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCa < 1:9813076/51‑1 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc > 1:6919833/1‑51 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc < 1:534665/51‑1 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAcc < 1:260355/51‑1 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:491474/1‑51 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:6033390/1‑51 (MQ=255) ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCa > 1:6417056/1‑51 (MQ=255) tGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAt < 1:3137553/51‑1 (MQ=255) ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtt < 1:7380003/51‑1 (MQ=255) ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtt < 1:6073404/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGTAGTTTTGTACTGCACCCAttt < 1:9175510/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt < 1:841024/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt < 1:5156819/51‑1 (MQ=255) gCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAttt < 1:10789131/51‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt < 1:4335551/51‑1 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt < 1:1794736/51‑1 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg < 1:2302418/51‑1 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:10500759/1‑51 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg > 1:2629645/1‑51 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt > 1:8774118/1‑51 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgt < 1:2862066/51‑1 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgtt > 1:9139848/1‑51 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgttg < 1:2015750/51‑1 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttgttg < 1:9260646/51‑1 (MQ=255) aGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTttg < 1:9367013/48‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCCCCCATTTTGTTGGa < 1:6787169/51‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa > 1:854482/1‑51 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa < 1:1472421/51‑1 (MQ=255) cAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGa < 1:1724280/51‑1 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:1576582/1‑51 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc < 1:3176720/51‑1 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:1137852/1‑51 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc > 1:5020569/1‑51 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc < 1:7670704/51‑1 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc < 1:8125929/51‑1 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACg > 1:9748214/1‑51 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGa < 1:8595891/51‑1 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt > 1:9816415/1‑51 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt < 1:10912976/51‑1 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt > 1:3989889/1‑51 (MQ=255) aaGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGAt > 1:5340184/1‑51 (MQ=255) aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:3388397/51‑1 (MQ=255) aGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:4953629/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:2905413/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:6745744/51‑1 (MQ=255) gCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGa < 1:5832387/51‑1 (MQ=255) cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:10304378/51‑1 (MQ=255) cccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaa < 1:4940975/51‑1 (MQ=255) ccGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGaaa > 1:3438690/1‑51 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATg < 1:378030/47‑1 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:10267223/1‑51 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:10345756/1‑51 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:8545417/1‑51 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:4447727/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:6055303/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:88017/51‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:10388427/51‑1 (MQ=255) acacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:7730562/51‑1 (MQ=255) acacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATgg < 1:6505489/51‑1 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 1:140006/51‑1 (MQ=255) cacGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 1:9500505/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:10660444/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:10387803/1‑51 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:3956749/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:9603653/51‑1 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:10167392/1‑51 (MQ=255) acGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa > 1:2429815/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:228421/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:211750/51‑1 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:6104209/51‑1 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt > 1:4671489/1‑51 (MQ=255) cGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:3440521/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:776376/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:162846/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:3790771/51‑1 (MQ=255) gCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:2931479/51‑1 (MQ=255) tCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc > 1:7939392/1‑51 (MQ=255) ccAGCAGTTTTGTACTGCCCCCATTTTGTTGGACGATGAAATgg < 1:10026278/44‑1 (MQ=255) agcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:4207797/1‑51 (MQ=255) gcagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt > 1:10753891/1‑51 (MQ=255) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:5801812/51‑1 (MQ=40) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa < 1:3734207/51‑1 (MQ=40) cagTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 1:5975618/1‑51 (MQ=40) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:2464478/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:846150/1‑51 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:4159412/1‑51 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:8240273/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:4822649/1‑51 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa < 1:4796390/51‑1 (MQ=38) agTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa > 1:10039403/1‑51 (MQ=38) gTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat > 1:6261556/1‑51 (MQ=35) | GCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > REL606/664638‑664734 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |