| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893587–3894993 | 3901134 | 6142–7548 | 33 [30] | [0] 152 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 148 (1.900) | 69/98 | 0.0 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 0 (0.000) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 221 total aligned reads displayed.
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894946‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG > REL606/3901135‑3901184 TCAGACCTATATGCCTCGTGTTTAACTGTGCAACTTTTTGGGGTCAGTACA < 1:436092/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:78600/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3669976/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4431308/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6746500/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:1589419/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:5095700/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4187477/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:6164208/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:537090/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:2090610/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:6555207/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2212146/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7098024/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2261947/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2432978/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6850881/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7024143/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2652648/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:3776802/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2782982/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:6878690/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2842290/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:5808674/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:5483336/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:6366442/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:6911145/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3492754/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:7017774/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3285560/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3296130/51‑1TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:3361846/1‑51TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:3398778/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:6592006/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:6991108/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:3150197/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:313060/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:6891406/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:3027738/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:2973267/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:2805253/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:4871862/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:4802251/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:6814304/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:4592836/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:5298575/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:4133710/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:4520797/1‑51 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:1410611/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA < 1:6296859/51‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAA > 1:1523159/1‑51 AGACCTATATGCCTCGTGTTTAACTGTTCAACTTTTTGGGGTCAGTACAAT < 1:6685767/51‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAT < 1:4755236/51‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATT < 1:5902653/51‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTG < 1:5150747/51‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTC > 1:2469116/1‑51 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCG > 1:7224193/1‑51 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGA < 1:6157890/51‑1 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGAC < 1:5021429/51‑1 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGAC > 1:1359648/1‑51 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACA > 1:6472041/1‑51 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGT < 1:6772186/51‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTC < 1:4085363/51‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAG > 1:318218/1‑48 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGT > 1:4288947/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT > 1:633589/1‑51 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTT > 1:2167406/1‑51 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTG > 1:3589928/1‑51 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGT < 1:2720035/51‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGT > 1:1632358/1‑51 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGT < 1:5190254/51‑1 TAACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCC > 1:7209756/1‑51 ACTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTT < 1:4358313/51‑1 CTGTCCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTC > 1:2907416/1‑51 CCAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATT < 1:1895415/51‑1 CAACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTC > 1:5119263/1‑51 AACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCC > 1:856957/1‑51 AACTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCC > 1:3859748/1‑51 CTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTT > 1:3562354/1‑51 CTTTTTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTT < 1:1782991/51‑1 TTGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATA < 1:4045442/51‑1 TGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAA < 1:1218835/51‑1 TGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAA < 1:6060807/51‑1 TGGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAA > 1:6556274/1‑51 GGGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAA < 1:3434831/51‑1 GGGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAC > 1:224536/1‑51 GGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACG < 1:667689/51‑1 GGTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACG > 1:5604710/1‑51 GTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGC < 1:638765/51‑1 GTCAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGC < 1:7164628/51‑1 CAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGA > 1:127114/1‑51 CAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGA > 1:355920/1‑51 CAGTACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGA > 1:3959825/1‑51 ACAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGA < 1:6947797/51‑1 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC < 1:2589269/51‑1 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC < 1:623781/51‑1 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC < 1:3718083/51‑1 CAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAC > 1:3474700/1‑51 AATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG > 1:1655691/1‑51 AATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG < 1:4709775/51‑1 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894946‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACG > REL606/3901135‑3901184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |