| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893587–3894993 | 3901134 | 6142–7548 | 33 [30] | [0] 152 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 148 (1.900) | 69/98 | 0.0 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 0 (0.000) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 152 total aligned reads displayed.
TGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGG > REL606/3901085‑3901185 | cagacctatatggctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4211686‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:5298575‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:2805253‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:7217240‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4871862‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1523159‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:5019385‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:3150197‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1677948‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:6976315‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:6891406‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:1995597‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:3660680‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:4133710‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:3027738‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:517779‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:6592006‑M2/1‑1 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:415896‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:6397055‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa > 1:4520797‑M2/51‑51 (MQ=255)cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaa < 1:4411357‑M2/1‑1 (MQ=255) agacctatatgcctcgtgtttaactgttcaactttttggggtcagtacaAt < 1:6685767‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt > 1:7294776‑M2/50‑51 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt < 1:7000413‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt < 1:4755236‑M2/2‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAt > 1:5102758‑M2/50‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAtt > 1:3944493‑M2/49‑51 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAtt < 1:5902653‑M2/3‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 1:5150747‑M2/4‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGt > 1:4821262‑M2/47‑51 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCg > 1:6610225‑M2/44‑51 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCg < 1:7022300‑M2/8‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 1:5021429‑M2/10‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc > 1:1359648‑M2/42‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc > 1:6886008‑M2/42‑51 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 1:3787626‑M2/41‑51 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 1:6472041‑M2/41‑51 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGt < 1:5273281‑M2/13‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGt > 1:1634323‑M2/39‑51 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGt < 1:6772186‑M2/13‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc > 1:903123‑M2/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTc < 1:4085363‑M2/14‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAg > 1:318218‑M2/37‑48 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 1:6556053‑M2/37‑51 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 1:2241307‑M2/37‑51 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGt > 1:4288947‑M2/36‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGtt > 1:2167406‑M2/35‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGtt > 1:633589‑M2/35‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGtt > 1:1510519‑M2/35‑51 (MQ=255) tgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtg < 1:5584793‑M2/18‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtg > 1:3589928‑M2/34‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt < 1:851889‑M2/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt > 1:1632358‑M2/33‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt < 1:2720035‑M2/19‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg > 1:5452614‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg > 1:3314819‑M2/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg < 1:668211‑M2/20‑1 (MQ=255) taactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGcc > 1:7209756‑M2/30‑51 (MQ=255) taactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGcc > 1:1361387‑M2/30‑51 (MQ=255) aactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCt < 1:3141320‑M2/23‑1 (MQ=255) actgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCtt < 1:1268609‑M2/24‑1 (MQ=255) actgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCtt < 1:4358313‑M2/24‑1 (MQ=255) actgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCtt < 1:7175539‑M2/24‑1 (MQ=255) ctgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTc > 1:5638448‑M2/27‑51 (MQ=255) ctgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTc > 1:2907416‑M2/27‑51 (MQ=255) tgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTcc < 1:2414905‑M2/26‑1 (MQ=255) ccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCAtt < 1:1895415‑M2/29‑1 (MQ=255) ccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCAtt > 1:285770‑M2/23‑51 (MQ=255) caactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTc > 1:5119263‑M2/22‑51 (MQ=255) aactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc < 1:6966147‑M2/31‑1 (MQ=255) aactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc > 1:3859748‑M2/21‑51 (MQ=255) actttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCt < 1:3444019‑M2/32‑1 (MQ=255) ctttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCtt < 1:1782991‑M2/33‑1 (MQ=255) ctttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCtt > 1:3562354‑M2/19‑51 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 1:6114194‑M2/18‑51 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 1:2576604‑M2/18‑51 (MQ=255) ttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa < 1:6820270‑M2/35‑1 (MQ=255) ttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa > 1:3473907‑M2/17‑51 (MQ=255) ttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATa < 1:4045442‑M2/37‑1 (MQ=255) tggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:1218835‑M2/38‑1 (MQ=255) tggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:2147538‑M2/38‑1 (MQ=255) tggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:6060807‑M2/38‑1 (MQ=255) ggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaaa < 1:6815334‑M2/39‑1 (MQ=255) ggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaaa < 1:628012‑M2/39‑1 (MQ=255) gggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc > 1:224536‑M2/12‑51 (MQ=255) gggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc < 1:4577488‑M2/40‑1 (MQ=255) gtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAcgc < 1:638765‑M2/42‑1 (MQ=255) gtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAcgc < 1:7164628‑M2/42‑1 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGa < 1:3383007‑M2/44‑1 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGa > 1:3959825‑M2/8‑51 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGa > 1:355920‑M2/8‑51 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAg < 1:3240021‑M2/46‑1 (MQ=255) acaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGa < 1:2457415‑M2/48‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc > 1:3542840‑M2/3‑51 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:2589269‑M2/49‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:623781‑M2/49‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc < 1:3718083‑M2/49‑1 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 1:4709775‑M2/50‑1 (MQ=255) aTTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACgg < 1:6799903/51‑1 (MQ=255) aTTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACgg < 1:4448559/51‑1 (MQ=255) | TGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGG > REL606/3901085‑3901185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |