mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.7 revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | pYTK001_with_tdk_kan | 693 | +G | intergenic (–/+1118) | – / ← CamR | –/– |
| RA | pYTK001_with_tdk_kan | 782 | A→G | intergenic (–/+1029) | – / ← CamR | –/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ADP1‑WT | = 321573 | 0 (NA) | 44 (inf) | 40/246 | NT | 100% | noncoding (2/1237 nt) | IS1236 | repeat region |
| ? | ADP1‑WT | 322811 = | 0 (NA) | coding (892/897 nt) | ACIAD0323 | LysR family transcriptional regulator | |||||
| * | ? | ADP1‑WT | = 941305 | 0 (NA) | 38 (inf) | 31/248 | NT | 100% | noncoding (1237/1237 nt) | IS1236 | repeat region |
| ? | ADP1‑WT | 944855 = | 0 (NA) | noncoding (2/1237 nt) | IS1236 | repeat region | |||||
| * | ? | ADP1‑WT | = 1248191 | 0 (NA) | 36 (inf) | 32/250 | NT | 100% | intergenic (+164/+6) | rnhB/ACIAD1249 | ribonuclease HII/IS1236 transposase protein 2 |
| ? | ADP1‑WT | 1249429 = | 0 (NA) | coding (175/213 nt) | csrA | carbon storage regulator | |||||
| * | ? | ADP1‑WT | = 1668722 | 0 (NA) | 40 (inf) | 37/250 | NT | 100% | intergenic (‑145/+101) | ACIAD1663/ACIAD1664 | hypothetical protein/phosphatidate cytidylyltransferase |
| ? | pYTK001_with_tdk_kan | 14 = | 0 (NA) | intergenic (–/+1797) | –/CamR | –/– | |||||
| * | ? | ADP1‑WT | 1722721 = | 0 (NA) | 36 (inf) | 30/250 | NT | 100% | coding (1536/2397 nt) | quiA | quinate/shikimate dehydrogenase [pyrroloquinoline‑quinone] (NAD(P)‑independent quinate dehydrogenase) |
| ? | pYTK001_with_tdk_kan | = 1688 | 0 (NA) | intergenic (–/+123) | –/CamR | –/– | |||||
| * | ? | ADP1‑WT | = 1799600 | 0 (NA) | 47 (inf) | 35/250 | NT | 100% | coding (1324/1362 nt) | ACIAD1790 | hypothetical protein |
| ? | ADP1‑WT | 1800838 = | 0 (NA) | coding (26/1626 nt) | ACIAD1794 | hypothetical protein | |||||
| * | ? | ADP1‑WT | = 2726454 | 0 (NA) | 30 (inf) | 28/250 | NT | 100% | intergenic (‑741/+6) | ACIAD2778/ACIAD2779 | AraC family transcriptional regulator/hypothetical protein |
| ? | ADP1‑WT | 2727723 = | 0 (NA) | intergenic (‑186/+93) | ACIAD2782/ACIAD2783 | hypothetical protein/hypothetical protein | |||||