breseq  version 0.35.7  revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA pYTK001_with_tdk_kan 693 +G intergenic (–/+1118)  / ← CamR –/–
RA pYTK001_with_tdk_kan 782 A→G intergenic (–/+1029)  / ← CamR –/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? ADP1‑WT = 3215730 (NA)44 (inf) 40/246 NT 100% noncoding (2/1237 nt) IS1236 repeat region
?ADP1‑WT 322811 = 0 (NA)coding (892/897 nt) ACIAD0323 LysR family transcriptional regulator
* ? ADP1‑WT = 9413050 (NA)38 (inf) 31/248 NT 100% noncoding (1237/1237 nt) IS1236 repeat region
?ADP1‑WT 944855 = 0 (NA)noncoding (2/1237 nt) IS1236 repeat region
* ? ADP1‑WT = 12481910 (NA)36 (inf) 32/250 NT 100% intergenic (+164/+6) rnhB/ACIAD1249 ribonuclease HII/IS1236 transposase protein 2
?ADP1‑WT 1249429 = 0 (NA)coding (175/213 nt) csrA carbon storage regulator
* ? ADP1‑WT = 16687220 (NA)40 (inf) 37/250 NT 100% intergenic (‑145/+101) ACIAD1663/ACIAD1664 hypothetical protein/phosphatidate cytidylyltransferase
?pYTK001_with_tdk_kan 14 = 0 (NA)intergenic (–/+1797) –/CamR –/–
* ? ADP1‑WT 1722721 =0 (NA)36 (inf) 30/250 NT 100% coding (1536/2397 nt) quiA quinate/shikimate dehydrogenase [pyrroloquinoline‑quinone] (NAD(P)‑independent quinate dehydrogenase)
?pYTK001_with_tdk_kan = 1688 0 (NA)intergenic (–/+123) –/CamR –/–
* ? ADP1‑WT = 17996000 (NA)47 (inf) 35/250 NT 100% coding (1324/1362 nt) ACIAD1790 hypothetical protein
?ADP1‑WT 1800838 = 0 (NA)coding (26/1626 nt) ACIAD1794 hypothetical protein
* ? ADP1‑WT = 27264540 (NA)30 (inf) 28/250 NT 100% intergenic (‑741/+6) ACIAD2778/ACIAD2779 AraC family transcriptional regulator/hypothetical protein
?ADP1‑WT 2727723 = 0 (NA)intergenic (‑186/+93) ACIAD2782/ACIAD2783 hypothetical protein/hypothetical protein