New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ADP1‑WT	= 1248191	0 (NA)	36 (inf)	32/250	NT	100%	intergenic (+164/+6)	rnhB/ACIAD1249	ribonuclease HII/IS1236 transposase protein 2
	?	ADP1‑WT	1249429 =	0 (NA)					coding (175/213 nt)	csrA	carbon storage regulator

ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ADP1‑WT/1248069‑1248191 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTA  >  ADP1‑WT/1249429‑1249544                                                                                                                                                                                                                                                 ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCAT                                                                                                                   >  2:458991/1‑126    AGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCA                                                                                                                <  1:28000/126‑1    AGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCA                                                                                                                <  1:44462/126‑1    AGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCA                                                                                                                <  2:250738/126‑1        GCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGC                                                                                                            <  2:240074/126‑1         CTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCA                                                                                                           <  1:385077/126‑1                  GGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGT                                                                                                  <  1:231326/126‑1                    GAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTG                                                                                                >  2:194717/1‑126                          AATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACG                                                                                          <  2:244429/126‑1                             TAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTG                                                                                       <  2:305876/126‑1                                       CTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTAATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCT                                                                             <  1:195011/126‑1                                           AACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCAC                                                                         >  1:265959/1‑126                                            ACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACG                                                                        >  1:152616/1‑126                                                TTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGA                                                                    <  1:459653/126‑1                                                 TAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAA                                                                   <  2:311478/126‑1                                                  AAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAAC                                                                  <  2:260387/126‑1                                                   AAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACA                                                                 >  1:152626/1‑126                                                     ATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGA                                                               <  2:464884/126‑1                                                     ATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGA                                                               <  2:183021/126‑1                                                        ATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGAC                                                            <  1:33818/126‑1                                                         TTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACT                                                           >  1:29684/1‑126                                                          TTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTT                                                          >  2:370217/1‑126                                                          TTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTT                                                          >  2:68604/1‑126                                                            TGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCT                                                        <  2:265559/126‑1                                                               GAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTC                                                     <  2:457895/126‑1                                                                AGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCG                                                    <  2:76822/126‑1                                                                 GTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGG                                                   <  1:84163/126‑1                                                                  TAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGACAAATCTCTTCACGATGAACAGAGACTTCTTTCGGA                                                  >  2:98973/1‑126                                                                      TATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCAT                                              >  1:252747/1‑126                                                                                 AAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATA                                   <  1:219937/126‑1                                                                                    GAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGA                                <  1:441539/126‑1                                                                                        GCTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATGCGAACCT                            >  1:160842/1‑126                                                                                         CTGATAATCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTG                           <  2:29644/126‑1                                                                                                TCTTGATCTAAATGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCT                    >  1:245931/1‑126                                                                                                            TGTTGAAGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGC        >  2:278608/1‑126                                                                                                                  AGATGTTCATCATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTA  <  2:346991/126‑1                                                                                                                                                                                                                                                 ATTAGCCGCTTTAATTTGGGAGAAAAATTAAAAAATAACTTTAACGGTTAAAATTATTTTGTGAGTAGTTATCATCTTCAAAAGAAGGCTGATAATCTTGATCTAAATGTTGAAGATGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ADP1‑WT/1248069‑1248191 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGCATTGCACGTTCGTGTTGAATACGTTGATAAATCTCTTCACGATGAACAGAGACTTCTTTCGGAGCATTCACACCAATACGAACCTGATTACCTTTAACACCAAGCACAGTA  >  ADP1‑WT/1249429‑1249544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.