New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ADP1‑WT	= 2726454	0 (NA)	30 (inf)	28/250	NT	100%	intergenic (‑741/+6)	ACIAD2778/ACIAD2779	AraC family transcriptional regulator/hypothetical protein
	?	ADP1‑WT	2727723 =	0 (NA)					intergenic (‑186/+93)	ACIAD2782/ACIAD2783	hypothetical protein/hypothetical protein

TTTGATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ADP1‑WT/2726334‑2726454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGTTAAAGATAAAAAAATTG  >  ADP1‑WT/2727723‑2727844                                                                                                                                                                                                                                                     TTTGATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCA                                                                                                                       >  1:140128/1‑126   TGATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAG                                                                                                                     <  2:353368/126‑1     ATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTG                                                                                                                   <  2:208873/126‑1     ATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTG                                                                                                                   >  1:72176/1‑126          CTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTT                                                                                                              >  2:480623/1‑126             CATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTAC                                                                                                           <  1:355820/126‑1              ATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACT                                                                                                          <  1:192772/126‑1              ATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACT                                                                                                          >  1:322528/1‑126                 AAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGA                                                                                                       <  1:400353/126‑1                         CATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACA                                                                                               >  2:495117/1‑126                                CATTTTACTGTCATAGTTATCGCACTATTTTATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATG                                                                                        >  1:48202/1‑126                                CATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATG                                                                                        >  1:425396/1‑126                                  TTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAG                                                                                      >  2:19771/1‑126                                          TCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTC                                                                              <  2:142207/126‑1                                             TAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAAT                                                                           <  1:481312/126‑1                                                      CACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAA                                                                  <  2:322080/126‑1                                                              GATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTT                                                          >  2:281448/1‑126                                                              GATAAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTT                                                          <  1:292675/126‑1                                                                   GATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCT                                                     <  1:231117/126‑1                                                                    ATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTT                                                    >  1:457658/1‑126                                                                                        CTGTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAA                                >  1:43040/1‑126                                                                                          GTTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAAC                              <  1:436686/126‑1                                                                                           tctAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACT                             <  2:45518/123‑1                                                                                           TTGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACT                             <  2:238129/126‑1                                                                                            TGAGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTA                            <  2:72094/126‑1                                                                                              AGGATGATACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTAga                          >  1:45574/1‑124                                                                                                     TACTTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGT                   <  1:281872/126‑1                                                                                                        TTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGTTAA                <  2:457001/126‑1                                                                                                        TTTCGACTAACTGAGTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGTTAA                >  1:224286/1‑126                                                                                                                      GTAGGTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGTTAAAGATAAAAAAATTG  <  2:491706/126‑1                                                                                                                                                                                                                                                     TTTGATGCGCTACATTAAAATCATCATCGATCATTTTACTGTCATAGTTATCGCACTATTTGATCAGATTACCTCACCATTTAATATCTGTTGAGGATGATACTTTCGACTAACTGAGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ADP1‑WT/2726334‑2726454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCAAGTGGGGTTTACTGGATGCTTACAAAATATGAGCCTAACTCAATAATTTTAAATATTAGTTAGGCTTATTTATCACTTAATGATTAAACTATTTAGCAGTTAAAGATAAAAAAATTG  >  ADP1‑WT/2727723‑2727844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.