| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 547,700 | Δ8,125 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546956–547698 | 555824–555805 | 8108–8869 | 55 [50] | [0] 158 | [insB‑6]–[ECB_00513] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,[ECB_00513] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 547699 | NA (NA) | 101 (1.060) | 59/80 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 555825 = | 0 (0.000) | coding (1110/2346 nt) | ECB_00513 | conserved hypothetical protein | |||||
CTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > REL606/546905‑546979 | cTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATa < 1:10713815/51‑1 (MQ=255)cTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATa < 1:6388383/51‑1 (MQ=255)cTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATa > 1:5212768/1‑51 (MQ=255)cTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATa > 1:2903690/1‑51 (MQ=255)cTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATa > 1:9726050/1‑51 (MQ=255) tCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAg < 1:2951035/51‑1 (MQ=255) tCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAg > 1:1999128/1‑51 (MQ=255) cATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgt < 1:2126134/51‑1 (MQ=255) cATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgt < 1:9901986/51‑1 (MQ=255) aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtg < 1:3847658/51‑1 (MQ=255) aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtg < 1:6448970/51‑1 (MQ=255) aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtg > 1:188835/1‑51 (MQ=255) aTAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtg < 1:1279816/51‑1 (MQ=255) tAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtgt > 1:8579890/1‑51 (MQ=255) tAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtgt < 1:9599795/51‑1 (MQ=255) tAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtgt > 1:8021026/1‑51 (MQ=255) tAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAgtgt < 1:4703517/51‑1 (MQ=255) aaGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtt > 1:5390772/1‑51 (MQ=255) aaGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtt < 1:3419223/51‑1 (MQ=255) gtagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:10406967/1‑51 (MQ=255) gtagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtttt < 1:9196128/51‑1 (MQ=255) gtagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:2009665/1‑51 (MQ=255) gtagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:5238073/1‑51 (MQ=255) gtagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGtttt < 1:255205/51‑1 (MQ=255) tagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:1552677/51‑1 (MQ=255) tagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:10207091/51‑1 (MQ=255) tagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:631968/51‑1 (MQ=255) tagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTa > 1:3227306/1‑51 (MQ=255) tagtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTa < 1:5251788/51‑1 (MQ=255) gtGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATg < 1:1469230/51‑1 (MQ=255) tGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:1287682/51‑1 (MQ=255) tGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:1260857/1‑51 (MQ=255) tGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:638278/51‑1 (MQ=255) gaaaccgaaaccGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg < 1:6655440/51‑1 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:848459/51‑1 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:5898219/1‑51 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:7153706/1‑51 (MQ=255) aaaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:7408574/1‑51 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:3147783/51‑1 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:210396/51‑1 (MQ=255) aaccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:7023787/51‑1 (MQ=255) accgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa < 1:3730268/51‑1 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa < 1:9348909/51‑1 (MQ=255) ccgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa > 1:43054/1‑51 (MQ=255) cgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:7950588/1‑51 (MQ=40) cgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:6714541/1‑51 (MQ=40) cgaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:3969168/1‑51 (MQ=40) gaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg < 1:7465528/51‑1 (MQ=38) gaaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg > 1:10704986/1‑51 (MQ=38) aaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc > 1:1011409/1‑51 (MQ=35) aaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc < 1:9392755/51‑1 (MQ=35) aaaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc > 1:1668150/1‑51 (MQ=35) aaccgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:4588668/51‑1 (MQ=33) accgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc < 1:6315385/51‑1 (MQ=31) accgGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc < 1:3790638/51‑1 (MQ=31) | CTCATAAGTAGTGGAGAAACCGAAACCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > REL606/546905‑546979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |