Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC REL606 547,700 Δ8,125 bp 100% IS1‑mediated [nmpC][ECB_00513] [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 546956–547698 555824–555805 8108–8869 55 [50] [0] 158 [insB‑6]–[ECB_00513] [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,[ECB_00513]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 547699NA (NA)101 (1.060) 59/80 NT 100% noncoding (1/768 nt) IS1 repeat region
?REL606 555825 = 0 (0.000)coding (1110/2346 nt) ECB_00513 conserved hypothetical protein

Only 100 of 158 total aligned reads displayed.

CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547650‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA  >  REL606/555825‑555874
                                                                                                    
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:10062631/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:8495982/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:8342325/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   >  1:7597679/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:7031079/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:609824/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:5808188/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   >  1:5102185/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:4220964/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:395989/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:268528/51‑1
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   >  1:2529639/1‑51
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:180367/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:2768996/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  <  1:1250115/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  <  1:3822662/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:10328923/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:4289823/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  <  1:891448/51‑1
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:3168289/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:7926408/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:6176386/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCG                                                  >  1:2407354/1‑51
 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                   <  1:8739050/50‑1
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 >  1:5652477/1‑51
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 <  1:7596575/51‑1
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 <  1:240348/51‑1
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 <  1:7206043/51‑1
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 >  1:7273152/1‑51
  CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGA                                                 <  1:9324988/51‑1
   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGAT                                                <  1:8798555/51‑1
   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGAT                                                <  1:7447324/51‑1
   CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGAT                                                >  1:10479744/1‑51
    TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATT                                               <  1:74676/51‑1
     CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC                                              >  1:6294574/1‑51
     CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC                                              >  1:1621587/1‑51
     CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTC                                              >  1:8893070/1‑51
      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCA                                             >  1:9372244/1‑51
      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCA                                             >  1:7399001/1‑51
       AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCAC                                            >  1:8279647/1‑51
         AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTG                                          >  1:8375646/1‑51
         AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTG                                          <  1:2593732/51‑1
          ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGG                                         <  1:407544/51‑1
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT                                     <  1:3978640/51‑1
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT                                     >  1:5107158/1‑51
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT                                     <  1:1598798/51‑1
              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATAT                                     <  1:1310880/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATG                                    <  1:3233192/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATG                                    <  1:10438732/51‑1
               ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATG                                    >  1:9042189/1‑51
                TCATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGC                                   <  1:7073509/51‑1
                 CATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCT                                  >  1:7753321/1‑51
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT                                 >  1:5127369/1‑51
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT                                 <  1:9260099/51‑1
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT                                 <  1:5479435/51‑1
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT                                 <  1:7534207/51‑1
                  ATACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTT                                 <  1:10719563/51‑1
                   TACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTG                                >  1:3449045/1‑51
                   TACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTG                                <  1:5859670/51‑1
                    ACACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGC                               >  1:6688990/1‑51
                      ACTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTG                             <  1:2481877/51‑1
                       CTAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGG                            >  1:4468490/1‑51
                        TAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGC                           >  1:1820596/1‑51
                        TAAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGC                           <  1:2233541/51‑1
                         AAATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCT                          <  1:1665137/51‑1
                           ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT                        >  1:2136808/1‑51
                           ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT                        <  1:4685838/51‑1
                           ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT                        <  1:9386562/51‑1
                           ATCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTT                        <  1:5020752/51‑1
                            TCAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTT                       <  1:2964389/51‑1
                             CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC                      <  1:5203816/51‑1
                             CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC                      <  1:4051276/51‑1
                             CAGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTC                      >  1:10235738/1‑51
                              AGTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCG                     <  1:1358649/51‑1
                               GTAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGC                    >  1:738546/1‑51
                                TAAGTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCC                   <  1:2192818/51‑1
                                   GTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG                >  1:3509874/1‑51
                                   GTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG                <  1:6945203/51‑1
                                   GTTGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGG                <  1:10874213/51‑1
                                     TGGCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTT              <  1:904867/51‑1
                                       GCAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTAT            <  1:1347727/51‑1
                                        CAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATA           >  1:10152211/1‑51
                                        CAGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATA           <  1:7824114/51‑1
                                         AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA          <  1:7297584/51‑1
                                         AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA          <  1:472533/51‑1
                                         AGCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAA          <  1:4195708/51‑1
                                          GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAG         >  1:3849039/1‑51
                                          GCATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAG         <  1:7801668/51‑1
                                           CATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGC        >  1:809779/1‑51
                                            ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA       >  1:9886384/1‑51
                                            ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA       <  1:4356703/51‑1
                                            ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA       >  1:5825882/1‑51
                                            ATCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCA       >  1:3778161/1‑51
                                             TCACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAA      <  1:3713872/51‑1
                                               ACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAAT    <  1:10928160/51‑1
                                               ACCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAAT    <  1:6951094/51‑1
                                                CCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATA   <  1:914973/51‑1
                                                CCCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATA   >  1:7749921/1‑51
                                                 CCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA  >  1:6210412/1‑51
                                                 CCGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA  <  1:2743902/51‑1
                                                                                                    
CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/547650‑547699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATTCACTGGATATGCTTGCTGGCTTTTCGCCTGGTTATAAGCAAATAA  >  REL606/555825‑555874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.