| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 547,700 | Δ8,125 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546956–547698 | 555824–555805 | 8108–8869 | 55 [50] | [0] 158 | [insB‑6]–[ECB_00513] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,[ECB_00513] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 547699 | NA (NA) | 101 (1.060) | 59/80 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 555825 = | 0 (0.000) | coding (1110/2346 nt) | ECB_00513 | conserved hypothetical protein | |||||
CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACGTCAGTGCGGTCATTTT > REL606/547661‑547746 | cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATc > 1:6880173/1‑51 (MQ=255) tAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACGTc > 1:3517544/1‑51 (MQ=255) gcagcaTCACCACCGAAACCATCACCATTGGCTTCAGTTACg > 1:10902940/1‑42 (MQ=255) caccacCGAAACCATCACCATTGGCTTCAGTTACGTCAGTGCGGTCAtttt > 1:7163153/1‑51 (MQ=255) | CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGAAACCATCACCATTGGCTTCAGTTACGTCAGTGCGGTCATTTT > REL606/547661‑547746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |