| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 4,275,717 | 57510 bp→GTACA | 100% | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4275717 | 4333226 | 57510 | 156 [1] | [0] 158 | [yjcO]–[lysU] | [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4275716 | 0 (0.000) | 110 (1.330) +GTACA |
57/70 | NT | 100% | coding (232/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | 4333227 = | 0 (0.000) | coding (211/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||
Only 100 of 156 total aligned reads displayed.
CTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGC > REL606/4275666‑4275764 | ctctGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAt < 1:6884057/51‑1 (MQ=255)ctctGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAt < 1:6781323/51‑1 (MQ=255) ctGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgt > 1:1554020‑M1/1‑49 (MQ=255) tGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgta < 1:2626345‑M1/51‑4 (MQ=255) gCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtac > 1:10265535‑M1/1‑47 (MQ=255) gCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtac > 1:7330993‑M1/1‑47 (MQ=255) cAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAttt < 1:3199508/48‑1 (MQ=255) cAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtaca > 1:3878911‑M1/1‑46 (MQ=255) aaGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacac > 1:2967250‑M1/1‑45 (MQ=255) aaGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacac > 1:647204‑M1/1‑45 (MQ=255) aGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacaca < 1:6735734‑M1/51‑8 (MQ=255) aGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacaca < 1:6645983‑M1/51‑8 (MQ=255) aGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacaca < 1:3401558‑M1/51‑8 (MQ=255) gAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaa > 1:10359429‑M1/1‑43 (MQ=255) aaCTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaac < 1:2083963‑M1/51‑10 (MQ=255) aCTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaacc < 1:3533057‑M1/51‑11 (MQ=255) aCTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaacc < 1:3409886‑M1/51‑11 (MQ=255) aCTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaacc < 1:1976008‑M1/51‑11 (MQ=255) cTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccg > 1:3432264‑M1/1‑40 (MQ=255) ttttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccga > 1:3982250‑M1/1‑39 (MQ=255) tttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgag < 1:7588655‑M1/51‑14 (MQ=255) tttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgag > 1:395372‑M1/1‑38 (MQ=255) tttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgag > 1:271984‑M1/1‑38 (MQ=255) tttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgag < 1:6517085‑M1/51‑14 (MQ=255) tGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagac > 1:7056760‑M1/1‑36 (MQ=255) tGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagac > 1:9213555‑M1/1‑36 (MQ=255) gCTTGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagact > 1:3080840‑M1/1‑35 (MQ=255) ttGTGGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttc > 1:4344752‑M1/1‑33 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttca > 1:2563562‑M1/1‑32 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttca < 1:8105989‑M1/51‑20 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttca < 1:9398366‑M1/51‑20 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttca > 1:10936570‑M1/1‑32 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttca > 1:6117134‑M1/1‑32 (MQ=255) tgtgGATAGTCCAGACTGACCGGATTGGGGATgtacacaaccgagacttca > 1:10250835‑M1/1‑32 (MQ=255) gtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaa > 1:6205120‑M1/1‑31 (MQ=255) gtgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaa < 1:1763556‑M1/51‑21 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaat > 1:8298789‑M1/1‑30 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaat < 1:10221668‑M1/51‑22 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaat > 1:2279445‑M1/1‑30 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagact < 1:5822671‑M1/46‑17 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagac < 1:9707807‑M1/45‑16 (MQ=255) tgGATAGTCCAGACTGACCGGATTGGTGATgtacacaaccg < 1:2939127‑M1/41‑12 (MQ=255) ggATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatg < 1:10538043‑M1/51‑23 (MQ=255) ggATAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaat < 1:7945475‑M1/50‑22 (MQ=255) gATAGCCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaa < 1:8679574‑M1/48‑21 (MQ=255) aTAGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtt > 1:1336471‑M1/1‑27 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgttta < 1:1562509‑M1/51‑27 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgttta > 1:4653854‑M1/1‑25 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgttta > 1:1048919‑M1/1‑25 (MQ=255) aGTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgttta > 1:3561823‑M1/1‑25 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaa < 1:2489801‑M1/51‑28 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaa < 1:4501523‑M1/51‑28 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaa < 1:5967381‑M1/51‑28 (MQ=255) gTCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgttta > 1:4194934‑M1/1‑24 (MQ=255) tCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaag < 1:3634893‑M1/51‑29 (MQ=255) tCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaag < 1:7896863‑M1/51‑29 (MQ=255) tCCAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaag < 1:3929315‑M1/51‑29 (MQ=255) ccAGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaagg > 1:7125527‑M1/1‑22 (MQ=255) aGACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggat > 1:10207067‑M1/1‑20 (MQ=255) gACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggatt < 1:3348739‑M1/51‑33 (MQ=255) gACTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggatt > 1:9596955‑M1/1‑19 (MQ=255) aCTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattc < 1:6358283‑M1/51‑34 (MQ=255) cTGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattcc < 1:2951480‑M1/51‑35 (MQ=255) tGACCGGATTGGTGATgtacccaaccgagacttcaatgtttaaggattcca < 1:728718‑M1/51‑36 (MQ=255) tGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattcca < 1:10373814‑M1/51‑36 (MQ=255) tGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattcca > 1:4169365‑M1/1‑16 (MQ=255) tGACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattcca > 1:4919036‑M1/1‑16 (MQ=255) gACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccag > 1:7839798‑M1/1‑15 (MQ=255) gACCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccag < 1:6579910‑M1/51‑37 (MQ=255) aCCGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagt > 1:9268189‑M1/1‑14 (MQ=255) ccGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagtt > 1:2885496‑M1/1‑13 (MQ=255) ccGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagtt < 1:8377898‑M1/51‑39 (MQ=255) cGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttc > 1:1296451‑M1/1‑12 (MQ=255) cGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttc < 1:96531‑M1/51‑40 (MQ=255) cGGATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttc < 1:3627887‑M1/51‑40 (MQ=255) ggATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcc > 1:9526892‑M1/1‑11 (MQ=255) ggATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcc < 1:5441243‑M1/51‑41 (MQ=255) ggATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcc > 1:8158307‑M1/1‑11 (MQ=255) ggATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcc > 1:3281702‑M1/1‑11 (MQ=255) gATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcct < 1:8600432‑M1/51‑42 (MQ=255) gATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcct > 1:7818193‑M1/1‑10 (MQ=255) gATTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcct > 1:8940193‑M1/1‑10 (MQ=255) aTTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctg < 1:2494800‑M1/51‑43 (MQ=255) aTTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctg > 1:8033790‑M1/1‑9 (MQ=255) aTTGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctg < 1:6450777‑M1/51‑43 (MQ=255) ttGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctgg < 1:6880498‑M1/51‑44 (MQ=255) ttGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctgg > 1:4753702‑M1/1‑8 (MQ=255) tGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggt > 1:4423610‑M1/1‑7 (MQ=255) tGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggt > 1:4016484‑M1/1‑7 (MQ=255) tGGTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggt > 1:10650426‑M1/1‑7 (MQ=255) ggTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggtt > 1:3310339‑M1/1‑6 (MQ=255) ggTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggtt < 1:3494142‑M1/51‑46 (MQ=255) gTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggtta > 1:7208564‑M1/1‑5 (MQ=255) gTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggtta < 1:8184088‑M1/51‑47 (MQ=255) gTGATgtacacaaccgagacttcaatgtttaaggattccagttcctggtta > 1:1691104‑M1/1‑5 (MQ=255) tGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttat > 1:5234880‑M1/1‑4 (MQ=255) tGATgtacacaaccgagacttcaatgtttaaggattccagttcctggttat < 1:7238477‑M1/51‑48 (MQ=255) gATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatc < 1:7030739‑M1/51‑49 (MQ=255) gATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatc < 1:6307985‑M1/51‑49 (MQ=255) gATgtacacaaccgagacttcaatgtttaaggattccagttcctggttatc > 1:10935184‑M1/1‑3 (MQ=255) | CTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGC > REL606/4275666‑4275764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |