| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4034655 = | 129 (1.360) | 124 (1.340) | 57/78 | NT | 52.9% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 95 (1.030) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||
Only 100 of 360 total aligned reads displayed.
TCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAT > REL606/4034605‑4034705 | tctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaa > 1:4246383/1‑51 (MQ=255)cttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaaca > 1:2191260‑M1/51‑51 (MQ=255)cttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaaca < 1:3593862‑M1/1‑1 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa > 1:621466‑M1/50‑51 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa < 1:804033‑M1/2‑1 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa < 1:7134077‑M1/2‑1 (MQ=255) ctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaa > 1:6640231/1‑51 (MQ=255) ctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaa < 1:4201926/50‑1 (MQ=255) tcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaaa > 1:1753046‑M1/49‑51 (MQ=255) tcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaa < 1:3091279/51‑1 (MQ=255) cttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaaaa > 1:10398899‑M1/48‑51 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 1:10290698/51‑1 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa > 1:5735495/1‑51 (MQ=255) gAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAgcg < 1:1630264/51‑1 (MQ=255) cgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAgcg > 1:8871983‑M1/45‑51 (MQ=255) cgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAgcg < 1:2049042‑M1/7‑1 (MQ=255) aCAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGcgcg < 1:3561107/51‑1 (MQ=255) gacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGa < 1:7359497‑M1/10‑1 (MQ=255) gacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGa > 1:6446351‑M1/42‑51 (MQ=255) cAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGa > 1:4054028/1‑51 (MQ=255) cAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGa < 1:10439604/51‑1 (MQ=255) aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGaa > 1:9846252/1‑51 (MQ=255) cgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAg < 1:5479821‑M1/12‑1 (MQ=255) cgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAg > 1:2225878‑M1/40‑51 (MQ=255) gcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGc > 1:6520693‑M1/39‑51 (MQ=255) gTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGc > 1:5134741/1‑51 (MQ=255) ttGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCa < 1:5945913/51‑1 (MQ=255) cagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCa < 1:3290692‑M1/14‑1 (MQ=255) tGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCAt > 1:7864336/1‑51 (MQ=255) tGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCAt > 1:1008357/1‑51 (MQ=255) agagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCAt < 1:5589328‑M1/15‑1 (MQ=255) gCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATc > 1:775348/1‑51 (MQ=255) cACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCa > 1:9315350/1‑51 (MQ=255) cACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCa < 1:9680481/51‑1 (MQ=255) agcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCa > 1:9557468‑M1/35‑51 (MQ=255) agcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCa > 1:3882563‑M1/35‑51 (MQ=255) agcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCa > 1:4699325‑M1/35‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:5662749‑M1/33‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:8690146‑M1/33‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:1831703‑M1/33‑51 (MQ=255) ccATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCaga < 1:8391909/51‑1 (MQ=255) ccATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCaga < 1:8139105/51‑1 (MQ=255) gatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCagag < 1:924001‑M1/20‑1 (MQ=255) gatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCagag > 1:6033629‑M1/32‑51 (MQ=255) cATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCagag < 1:6079290/51‑1 (MQ=255) atgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAgaga < 1:6294020‑M1/21‑1 (MQ=255) tgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGaa > 1:8930460‑M1/30‑51 (MQ=255) tgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGaa < 1:6984981‑M1/22‑1 (MQ=255) tgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGaa > 1:9360400‑M1/30‑51 (MQ=255) tttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAAt < 1:5526873/51‑1 (MQ=255) tGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACg > 1:2816412/1‑51 (MQ=255) catcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACg > 1:6735124‑M1/24‑51 (MQ=255) catcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACg > 1:3338489‑M1/24‑51 (MQ=255) catcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACg > 1:8066960‑M1/24‑51 (MQ=255) atcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACgg < 1:5361067‑M1/29‑1 (MQ=255) tcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGga < 1:8206161‑M1/30‑1 (MQ=255) tcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGga < 1:3721517‑M1/30‑1 (MQ=255) cATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACgg < 1:4171025/50‑1 (MQ=255) caattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGgag > 1:3742675‑M1/21‑51 (MQ=255) caattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGgag < 1:10863557‑M1/31‑1 (MQ=255) caattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGgag > 1:5218225‑M1/21‑51 (MQ=255) aTTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgag < 1:10651105/51‑1 (MQ=255) aTTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgag > 1:4443900/1‑51 (MQ=255) ttATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgaga > 1:4486788/1‑51 (MQ=255) aattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGgaga < 1:1361897‑M1/32‑1 (MQ=255) tataGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaa > 1:2671547/1‑51 (MQ=255) tataGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaa < 1:10521502/51‑1 (MQ=255) ttgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:8759420‑M1/18‑51 (MQ=255) ttgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:1498113‑M1/18‑51 (MQ=255) ttgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:1421566‑M1/18‑51 (MQ=255) taGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaa < 1:5026387/51‑1 (MQ=255) gCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaaaa > 1:4739611/1‑51 (MQ=255) cttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaaaa < 1:9751863‑M1/37‑1 (MQ=255) cttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaaaa < 1:2502667‑M1/37‑1 (MQ=255) ttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAg > 1:7437043‑M1/14‑51 (MQ=255) tcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGc < 1:10011409‑M1/39‑1 (MQ=255) tcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGc < 1:3976199‑M1/39‑1 (MQ=255) tcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGc < 1:9272360‑M1/39‑1 (MQ=255) tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc > 1:2454378/1‑51 (MQ=255) tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc < 1:584495/51‑1 (MQ=255) ttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCa < 1:6326313/51‑1 (MQ=255) ttACGGATAAAAAGCGCGAAGCATCAGAGAATTGAAGGAGAAAAAAGCCCa > 1:7585210/1‑51 (MQ=255) tcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCa > 1:5118168‑M1/10‑51 (MQ=255) cagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCAt > 1:9138150‑M1/9‑51 (MQ=255) agtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATg < 1:9402826‑M1/44‑1 (MQ=255) agtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATg < 1:7211564‑M1/44‑1 (MQ=255) aCGGATAAGAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATg > 1:6891073/1‑51 (MQ=255) cGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGc < 1:4523094/51‑1 (MQ=255) cGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGc < 1:10781021/51‑1 (MQ=255) tgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCa > 1:1240503‑M1/6‑51 (MQ=255) aTAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCaga > 1:7674220/1‑51 (MQ=255) tAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCagag > 1:666501/1‑51 (MQ=255) tAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCagag < 1:8817910/51‑1 (MQ=255) acAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCagag < 1:345840‑M1/49‑1 (MQ=255) cAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAgaga < 1:3650223‑M1/50‑1 (MQ=255) aaaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAgaga > 1:10721691/1‑51 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt < 1:5876476‑M1/51‑1 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt > 1:7494378‑M1/1‑51 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt > 1:8305663‑M1/1‑51 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt > 1:9940600‑M1/1‑51 (MQ=255) | TCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAT > REL606/4034605‑4034705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |