New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 4034655 =129 (1.360)124 (1.340) 57/78 NT 52.9% intergenic (‑58/+228) glnL/glnA sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase
?REL606 = 4034991 95 (1.030)coding (1302/1410 nt) glnA glutamine synthetase

Only 100 of 303 total aligned reads displayed.

TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTGC  >  REL606/4034941‑4035041
                                                  |                                                  
tcttctTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAac                                                    >  1:10097807/1‑51 (MQ=255)
tcttctTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAac                                                    <  1:2913985/51‑1 (MQ=255)
 cttcttCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACa                                                   <  1:10438418‑M2/51‑2 (MQ=255)
  ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa                                                  >  1:4521760‑M2/1‑49 (MQ=255)
  ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa                                                  >  1:6104788‑M2/1‑49 (MQ=255)
  ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa                                                  <  1:7134077‑M2/51‑3 (MQ=255)
  ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa                                                  >  1:9396964‑M2/1‑49 (MQ=255)
  ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa                                                  >  1:5770759‑M2/1‑49 (MQ=255)
   tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa                                                 >  1:7418284‑M2/1‑48 (MQ=255)
   tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa                                                 >  1:3328505‑M2/1‑48 (MQ=255)
   tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACg                                                 <  1:1757012/51‑1 (MQ=255)
    cttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaa                                                >  1:7211709‑M2/1‑47 (MQ=255)
    cttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaa                                                >  1:884549‑M2/1‑47 (MQ=255)
     ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag                                               >  1:6277017‑M2/1‑46 (MQ=255)
     ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag                                               <  1:8771113‑M2/51‑6 (MQ=255)
      tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagc                                              <  1:1894506‑M2/51‑7 (MQ=255)
      tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa                                              <  1:8307940/51‑1 (MQ=255)
      tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa                                              <  1:4399418/51‑1 (MQ=255)
       cgcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcg                                             >  1:8871983‑M2/1‑44 (MQ=255)
         cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg                                           <  1:5208779‑M2/51‑10 (MQ=255)
         cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg                                           <  1:6443000‑M2/51‑10 (MQ=255)
            cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag                                        <  1:5479821‑M2/51‑13 (MQ=255)
             gCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagc                                       >  1:6520693‑M2/1‑38 (MQ=255)
              cAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagca                                      <  1:4567086‑M2/51‑15 (MQ=255)
               agagCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcat                                     <  1:9484240‑M2/51‑16 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca                                   >  1:4699325‑M2/1‑34 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca                                   <  1:7569733‑M2/51‑18 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca                                   >  1:9557468‑M2/1‑34 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca                                   >  1:9288503‑M2/1‑34 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAg                                   <  1:4616333/51‑1 (MQ=255)
                 agCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAg                                   >  1:3514865/1‑51 (MQ=255)
                  gCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcag                                  >  1:5543345‑M2/1‑33 (MQ=255)
                   cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagt                                 >  1:5662748‑M2/1‑32 (MQ=255)
                   cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcaga                                 >  1:2700038‑M2/1‑32 (MQ=255)
                   cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcaga                                 >  1:8690146‑M2/1‑32 (MQ=255)
                   cGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGa                                 <  1:9011542/51‑1 (MQ=255)
                    gATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagag                                >  1:10666907‑M2/1‑31 (MQ=255)
                    gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa                                >  1:4120718/1‑51 (MQ=255)
                    gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa                                <  1:2170066/51‑1 (MQ=255)
                    gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa                                <  1:4918476/51‑1 (MQ=255)
                    gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa                                >  1:3928593/1‑51 (MQ=255)
                     aTGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAAc                               >  1:6716961/1‑51 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa                              >  1:6872628‑M2/1‑29 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa                              <  1:6984981‑M2/51‑23 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa                              >  1:8930460‑M2/1‑29 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa                              <  1:1162999‑M2/51‑23 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa                              >  1:9360400‑M2/1‑29 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACt                              >  1:3356583/1‑51 (MQ=255)
                      tGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACt                              <  1:5703658/51‑1 (MQ=255)
                        tACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcg                            >  1:631939/1‑51 (MQ=255)
                         aCGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgc                           <  1:7844492/51‑1 (MQ=255)
                          ctcATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg                          >  1:10372758/3‑51 (MQ=255)
                          cGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg                          >  1:3420144/1‑51 (MQ=255)
                          cGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg                          <  1:1299097/51‑1 (MQ=255)
                           gCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCgg                         >  1:5956540/1‑51 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg                       >  1:321091‑M2/1‑22 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg                       <  1:775151‑M2/51‑30 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg                       <  1:5361067‑M2/51‑30 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc                       >  1:9855258/1‑51 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc                       >  1:6083414/1‑51 (MQ=255)
                             aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc                       <  1:10797674/51‑1 (MQ=255)
                              tCAATTGCTTTGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTcc                      >  1:9198148/1‑51 (MQ=255)
                              tCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgga                      >  1:2283170‑M2/1‑21 (MQ=255)
                              tCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTcc                      >  1:7649547/1‑51 (MQ=255)
                               cAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggag                     <  1:10863557‑M2/51‑32 (MQ=255)
                               cAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggag                     >  1:3742675‑M2/1‑20 (MQ=255)
                               cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa                     >  1:6664078/1‑51 (MQ=255)
                               cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa                     <  1:2340396/51‑1 (MQ=255)
                                aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga                    >  1:8253425‑M2/1‑19 (MQ=255)
                                aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga                    <  1:8062608‑M2/51‑33 (MQ=255)
                                aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga                    <  1:1361897‑M2/51‑33 (MQ=255)
                                aaTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAg                    <  1:2762670/51‑1 (MQ=255)
                                 aTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGa                   <  1:8603828/51‑1 (MQ=255)
                                  ttGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaa                  >  1:1421566‑M2/1‑17 (MQ=255)
                                  ttGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaa                  <  1:10492322‑M2/51‑35 (MQ=255)
                                    gCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaa                <  1:3601666‑M2/51‑37 (MQ=255)
                                    gCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATcc                >  1:8734710/1‑51 (MQ=255)
                                     cTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaa               <  1:9751863‑M2/51‑38 (MQ=255)
                                     cTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCa               >  1:2063016/1‑51 (MQ=255)
                                      ttCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaag              >  1:8197331‑M2/1‑13 (MQ=255)
                                       tCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagc             <  1:10011409‑M2/51‑40 (MQ=255)
                                       tCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagc             <  1:3976199‑M2/51‑40 (MQ=255)
                                       tCGTCAGTGAACaaaagcgcgaagcatcagagaattaacggagaaaaaagc             <  1:5071736‑M2/51‑40 (MQ=255)
                                        cGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgtt            <  1:7352387/51‑1 (MQ=255)
                                         gTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagccc           <  1:2503665‑M2/51‑42 (MQ=255)
                                         gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATcc                <  1:3692835/46‑1 (MQ=255)
                                         gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc           <  1:6809864/51‑1 (MQ=255)
                                         gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc           <  1:4280693/51‑1 (MQ=255)
                                          tCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagccca          >  1:5118168‑M2/1‑9 (MQ=255)
                                          tCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttcg          <  1:4835024/51‑1 (MQ=255)
                                           cAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccat         <  1:8119883‑M2/51‑44 (MQ=255)
                                           cAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttcgt         >  1:5021650/1‑51 (MQ=255)
                                             gTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgc       <  1:1652889‑M2/51‑46 (MQ=255)
                                              tGAACACGCCACCGGCTTTCAGGAACTCGCGGTc                       <  1:2572628/34‑1 (MQ=255)
                                              tGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCa      <  1:8369693/51‑1 (MQ=255)
                                               gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag     >  1:3126615‑M2/1‑4 (MQ=255)
                                               gAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAg     <  1:10142722/51‑1 (MQ=255)
                                               gAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAg     <  1:5617508/51‑1 (MQ=255)
                                                aaCaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcaga    >  1:584857‑M2/1‑3 (MQ=255)
                                                aaCACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGt    <  1:10538541/51‑1 (MQ=255)
                                                  |                                                  
TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTGC  >  REL606/4034941‑4035041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.