New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 4034655 = | 129 (1.360) | 124 (1.340) | 57/78 | NT | 52.9% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
? | REL606 | = 4034991 | 95 (1.030) | coding (1302/1410 nt) | glnA | glutamine synthetase |
Only 100 of 303 total aligned reads displayed.
TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTGC > REL606/4034941‑4035041 | tcttctTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAac > 1:10097807/1‑51 (MQ=255) tcttctTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAac < 1:2913985/51‑1 (MQ=255) cttcttCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACa < 1:10438418‑M2/51‑2 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:4521760‑M2/1‑49 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:6104788‑M2/1‑49 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa < 1:7134077‑M2/51‑3 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:9396964‑M2/1‑49 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:5770759‑M2/1‑49 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa > 1:7418284‑M2/1‑48 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa > 1:3328505‑M2/1‑48 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACg < 1:1757012/51‑1 (MQ=255) cttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaa > 1:7211709‑M2/1‑47 (MQ=255) cttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaa > 1:884549‑M2/1‑47 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag > 1:6277017‑M2/1‑46 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag < 1:8771113‑M2/51‑6 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagc < 1:1894506‑M2/51‑7 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa < 1:8307940/51‑1 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa < 1:4399418/51‑1 (MQ=255) cgcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcg > 1:8871983‑M2/1‑44 (MQ=255) cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg < 1:5208779‑M2/51‑10 (MQ=255) cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg < 1:6443000‑M2/51‑10 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag < 1:5479821‑M2/51‑13 (MQ=255) gCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagc > 1:6520693‑M2/1‑38 (MQ=255) cAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagca < 1:4567086‑M2/51‑15 (MQ=255) agagCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcat < 1:9484240‑M2/51‑16 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca > 1:4699325‑M2/1‑34 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca < 1:7569733‑M2/51‑18 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca > 1:9557468‑M2/1‑34 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca > 1:9288503‑M2/1‑34 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAg < 1:4616333/51‑1 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAg > 1:3514865/1‑51 (MQ=255) gCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcag > 1:5543345‑M2/1‑33 (MQ=255) cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagt > 1:5662748‑M2/1‑32 (MQ=255) cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcaga > 1:2700038‑M2/1‑32 (MQ=255) cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcaga > 1:8690146‑M2/1‑32 (MQ=255) cGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGa < 1:9011542/51‑1 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagag > 1:10666907‑M2/1‑31 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa > 1:4120718/1‑51 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa < 1:2170066/51‑1 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa < 1:4918476/51‑1 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa > 1:3928593/1‑51 (MQ=255) aTGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAAc > 1:6716961/1‑51 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa > 1:6872628‑M2/1‑29 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa < 1:6984981‑M2/51‑23 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa > 1:8930460‑M2/1‑29 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa < 1:1162999‑M2/51‑23 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa > 1:9360400‑M2/1‑29 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACt > 1:3356583/1‑51 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACt < 1:5703658/51‑1 (MQ=255) tACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcg > 1:631939/1‑51 (MQ=255) aCGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgc < 1:7844492/51‑1 (MQ=255) ctcATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg > 1:10372758/3‑51 (MQ=255) cGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg > 1:3420144/1‑51 (MQ=255) cGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg < 1:1299097/51‑1 (MQ=255) gCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCgg > 1:5956540/1‑51 (MQ=255) aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg > 1:321091‑M2/1‑22 (MQ=255) aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg < 1:775151‑M2/51‑30 (MQ=255) aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg < 1:5361067‑M2/51‑30 (MQ=255) aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc > 1:9855258/1‑51 (MQ=255) aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc > 1:6083414/1‑51 (MQ=255) aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc < 1:10797674/51‑1 (MQ=255) tCAATTGCTTTGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTcc > 1:9198148/1‑51 (MQ=255) tCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgga > 1:2283170‑M2/1‑21 (MQ=255) tCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTcc > 1:7649547/1‑51 (MQ=255) cAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggag < 1:10863557‑M2/51‑32 (MQ=255) cAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggag > 1:3742675‑M2/1‑20 (MQ=255) cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa > 1:6664078/1‑51 (MQ=255) cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa < 1:2340396/51‑1 (MQ=255) aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga > 1:8253425‑M2/1‑19 (MQ=255) aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga < 1:8062608‑M2/51‑33 (MQ=255) aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga < 1:1361897‑M2/51‑33 (MQ=255) aaTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAg < 1:2762670/51‑1 (MQ=255) aTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGa < 1:8603828/51‑1 (MQ=255) ttGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaa > 1:1421566‑M2/1‑17 (MQ=255) ttGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaa < 1:10492322‑M2/51‑35 (MQ=255) gCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaa < 1:3601666‑M2/51‑37 (MQ=255) gCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATcc > 1:8734710/1‑51 (MQ=255) cTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaa < 1:9751863‑M2/51‑38 (MQ=255) cTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCa > 1:2063016/1‑51 (MQ=255) ttCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaag > 1:8197331‑M2/1‑13 (MQ=255) tCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagc < 1:10011409‑M2/51‑40 (MQ=255) tCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagc < 1:3976199‑M2/51‑40 (MQ=255) tCGTCAGTGAACaaaagcgcgaagcatcagagaattaacggagaaaaaagc < 1:5071736‑M2/51‑40 (MQ=255) cGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgtt < 1:7352387/51‑1 (MQ=255) gTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagccc < 1:2503665‑M2/51‑42 (MQ=255) gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATcc < 1:3692835/46‑1 (MQ=255) gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc < 1:6809864/51‑1 (MQ=255) gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc < 1:4280693/51‑1 (MQ=255) tCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagccca > 1:5118168‑M2/1‑9 (MQ=255) tCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttcg < 1:4835024/51‑1 (MQ=255) cAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccat < 1:8119883‑M2/51‑44 (MQ=255) cAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttcgt > 1:5021650/1‑51 (MQ=255) gTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgc < 1:1652889‑M2/51‑46 (MQ=255) tGAACACGCCACCGGCTTTCAGGAACTCGCGGTc < 1:2572628/34‑1 (MQ=255) tGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCa < 1:8369693/51‑1 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag > 1:3126615‑M2/1‑4 (MQ=255) gAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAg < 1:10142722/51‑1 (MQ=255) gAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAg < 1:5617508/51‑1 (MQ=255) aaCaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcaga > 1:584857‑M2/1‑3 (MQ=255) aaCACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGt < 1:10538541/51‑1 (MQ=255) | TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTGC > REL606/4034941‑4035041 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |