| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4034655 = | 129 (1.360) | 124 (1.340) | 57/78 | NT | 52.9% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 95 (1.030) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||
Only 100 of 184 total aligned reads displayed.
ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4034705‑4034655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < REL606/4034991‑4034942 ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT > 1:9940600/1‑51ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT > 1:5525531/1‑51ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT < 1:5876476/51‑1ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT < 1:5970930/51‑1 TCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTG < 1:3650223/51‑1 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC > 1:10022682/1‑51 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC > 1:2866793/1‑51 TGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCA > 1:8757372/1‑51 TGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCA < 1:10188861/51‑1 GCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCAC < 1:1652889/51‑1 GCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCAC < 1:3379737/51‑1 CATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACT < 1:7211564/51‑1 CATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCAC > 1:9381189/1‑50 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG > 1:9138150/1‑51 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:5640623/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:8119883/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:10607296/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:3505165/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:8355747/51‑1 TGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGA > 1:5118168/1‑51 GGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGAC < 1:2503665/51‑1 GGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACG < 1:1379264/51‑1 GCTTTTTTCTCCGTTAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:5071736/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:10011409/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:5737747/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:9272360/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:9869267/51‑1 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA > 1:1370421/1‑51 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA > 1:8197331/1‑51 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA < 1:3737941/51‑1 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA > 1:7437043/1‑51 TTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAG < 1:9751863/51‑1 TTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAG < 1:2298580/51‑1 TTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGC > 1:5274736/1‑51 TTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCA > 1:10913108/1‑51 TTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAA > 1:1498113/1‑51 TTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAA < 1:10492322/51‑1 TCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATT > 1:8253425/1‑51 TCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATT < 1:8062608/51‑1 TCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGA < 1:6631410/51‑1 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:3338489/1‑51 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:885652/1‑51 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:6735124/1‑51 AATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTA < 1:736678/51‑1 ATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTAC < 1:835730/51‑1 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA > 1:5635737/1‑51 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA > 1:6872628/1‑51 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA < 1:6984981/51‑1 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA > 1:8930460/1‑51 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT < 1:176468/51‑1 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT < 1:5909802/51‑1 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT > 1:10841218/1‑51 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC < 1:6324589/51‑1 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC < 1:7625389/51‑1 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC > 1:10666907/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:2700038/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:8690146/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:5662749/1‑51 CTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGC > 1:5543345/1‑51 TGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCT > 1:4699325/1‑51 TGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCT < 1:7569733/51‑1 TGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCT > 1:3882563/1‑51 GATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTC < 1:3719779/51‑1 GATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTC > 1:7702053/1‑51 ATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCT < 1:330961/51‑1 TGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTG < 1:4567086/51‑1 TGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTG < 1:3290692/51‑1 GCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGC > 1:6520693/1‑51 GCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGC < 1:423229/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG < 1:5479821/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG < 1:5775565/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG > 1:4497616/1‑51 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG > 1:2225878/1‑51 TTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGT < 1:1078434/51‑1 CGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCG < 1:5208779/51‑1 CGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCG < 1:6443000/51‑1 GCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGC > 1:1327928/1‑51 CGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCG > 1:6664180/1‑51 CGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCG > 1:8871983/1‑51 CGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCG < 1:9439033/51‑1 GCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGA < 1:1894506/51‑1 CTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAA > 1:6277017/1‑51 CTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAA < 1:8771113/51‑1 CTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAA < 1:3975147/51‑1 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAG < 1:9548439/51‑1 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAG > 1:1211036/1‑51 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAG > 1:7211709/1‑51 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAA < 1:7761567/50‑1 TTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGA < 1:4019800/51‑1 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:433457/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:5146592/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:6104788/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA < 1:804033/51‑1 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:9396964/1‑51 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < 1:10438418/51‑1 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG > 1:8896137/1‑51 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG > 1:9308643/1‑51 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < 1:3593862/51‑1 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG > 1:2191260/1‑51 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < 1:3128934/51‑1 ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4034705‑4034655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < REL606/4034991‑4034942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |