| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4034655 = | 115 (1.440) | 112 (1.440) | 65/98 | 0.0 | 53.6% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 81 (1.040) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||
Only 100 of 200 total aligned reads displayed.
TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTG > REL606/4034941‑4035040 | ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAacac < 1:952240/51‑1 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAacac > 1:6464101/1‑51 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:621466‑M2/1‑49 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa < 1:7134077‑M2/51‑3 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:5146592‑M2/1‑49 (MQ=255) ttcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaa > 1:433457‑M2/1‑49 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa < 1:4019800‑M2/51‑4 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa > 1:3328505‑M2/1‑48 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaa > 1:1753046‑M2/1‑48 (MQ=255) tcttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACg < 1:5575459/51‑1 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag < 1:3975147‑M2/51‑6 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaag > 1:6277017‑M2/1‑46 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGcc < 1:4538724/51‑1 (MQ=255) ttcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGcc > 1:2513972/1‑51 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagc < 1:1894506‑M2/51‑7 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagc > 1:6942643‑M2/1‑45 (MQ=255) tcGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCa < 1:4399418/51‑1 (MQ=255) cgcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcg < 1:2049042‑M2/51‑8 (MQ=255) gcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgc < 1:3567762‑M2/51‑9 (MQ=255) gcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgc > 1:1327928‑M2/1‑43 (MQ=255) gcgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCAcc > 1:4878433/1‑51 (MQ=255) cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg < 1:6443000‑M2/51‑10 (MQ=255) cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcg < 1:5208779‑M2/51‑10 (MQ=255) cgACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCg > 1:5027484/1‑51 (MQ=255) gACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcga > 1:3370606‑M2/1‑41 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag < 1:5479821‑M2/51‑13 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag < 1:5775565‑M2/51‑13 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag > 1:4497616‑M2/1‑39 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaag > 1:2225878‑M2/1‑39 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCg < 1:6679542/48‑1 (MQ=255) cGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCt > 1:4977469/1‑51 (MQ=255) gCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagc < 1:423229‑M2/51‑14 (MQ=255) gCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCtt < 1:6316548/51‑1 (MQ=255) gCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCtt > 1:6088324/1‑51 (MQ=255) cAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagca < 1:4567086‑M2/51‑15 (MQ=255) cAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagca < 1:3290692‑M2/51‑15 (MQ=255) cAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCttt > 1:5532164/1‑51 (MQ=255) gagCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatc < 1:3719779‑M2/51‑17 (MQ=255) gagCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCa < 1:5425394/51‑1 (MQ=255) agCGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatca > 1:4699325‑M2/1‑34 (MQ=255) gCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAgg > 1:7263375/1‑51 (MQ=255) cGATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcaga > 1:5662749‑M2/1‑32 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagag < 1:6324589‑M2/51‑21 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTc < 1:2723818/46‑1 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa > 1:3928593/1‑51 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa < 1:4918476/51‑1 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa > 1:4120718/1‑51 (MQ=255) gATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGaa < 1:2170066/51‑1 (MQ=255) aTGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagaga < 1:176468‑M2/51‑22 (MQ=255) aTGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagaga < 1:5909802‑M2/51‑22 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa < 1:1162999‑M2/51‑23 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaa > 1:6872628‑M2/1‑29 (MQ=255) tGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACt < 1:5703658/51‑1 (MQ=255) gTACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaat < 1:835730‑M2/51‑24 (MQ=255) gTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTc < 1:5990204/51‑1 (MQ=255) tACGCATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaat < 1:5042817‑M2/50‑24 (MQ=255) cGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTcgcg > 1:3420144/1‑51 (MQ=255) cATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacg > 1:885652‑M2/1‑23 (MQ=255) cATCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacg > 1:3338489‑M2/1‑23 (MQ=255) aTCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgg < 1:775151‑M2/51‑30 (MQ=255) aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc > 1:314118/1‑51 (MQ=255) aTCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTc > 1:6083414/1‑51 (MQ=255) tCAATTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacgga < 1:6631410‑M2/51‑31 (MQ=255) cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa < 1:2340396/51‑1 (MQ=255) cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa > 1:6664078/1‑51 (MQ=255) cAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCa > 1:3867827/1‑51 (MQ=255) aaTTGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggaga < 1:1361897‑M2/51‑33 (MQ=255) aaTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAg < 1:5089798/51‑1 (MQ=255) aaTTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAg < 1:2762670/51‑1 (MQ=255) ttGCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaa > 1:1498113‑M2/1‑17 (MQ=255) ttGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGAt > 1:677611/1‑51 (MQ=255) gCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaa < 1:3601666‑M2/51‑37 (MQ=255) gCTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaa > 1:5274736‑M2/1‑15 (MQ=255) cTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaa < 1:2298580‑M2/51‑38 (MQ=255) cTTCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaa < 1:2502667‑M2/51‑38 (MQ=255) ttCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaag < 1:3737941‑M2/51‑39 (MQ=255) tCGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagc < 1:5737747‑M2/51‑40 (MQ=255) cGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcc < 1:6826871‑M2/51‑41 (MQ=255) cGTCAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcc < 1:1379264‑M2/51‑41 (MQ=255) cGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgtt > 1:2066454/1‑51 (MQ=255) gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc > 1:1011164/1‑51 (MQ=255) gTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttc > 1:3692170/1‑51 (MQ=255) cAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccat < 1:5640623‑M2/51‑44 (MQ=255) cAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccat < 1:3505165‑M2/51‑44 (MQ=255) cAGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccat > 1:6728273‑M2/1‑8 (MQ=255) cAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAgttcgt > 1:2919641/1‑51 (MQ=255) aGTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatg < 1:7211564‑M2/51‑45 (MQ=255) gTGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgc < 1:1652889‑M2/51‑46 (MQ=255) tGAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgca > 1:1240503‑M2/1‑5 (MQ=255) tGAACACGCCACCGGCTTTCAGGAACTCGCGGTc < 1:2572628/34‑1 (MQ=255) tGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCa < 1:4705572/51‑1 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag < 1:4646162‑M2/51‑48 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag > 1:2866793‑M2/1‑4 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag > 1:89802‑M2/1‑4 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag > 1:2658589‑M2/1‑4 (MQ=255) gAACaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcag > 1:3126615‑M2/1‑4 (MQ=255) gAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAg < 1:5617508/51‑1 (MQ=255) aaCaaaagcgcgaagcatcagagaattgacggagaaaaaagcccatgcaga > 1:584857‑M2/1‑3 (MQ=255) aaCACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGt < 1:7011688/51‑1 (MQ=255) acacGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTg < 1:4599758/51‑1 (MQ=255) | TCTTCTTCGCGACGCAGAGCGATGTACGCATCAATTGCTTCGTCAGTGAACACGCCACCGGCTTTCAGGAACTCGCGGTCCAGATCCAGTTCGTTCAGTG > REL606/4034941‑4035040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |