| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4034655 = | 115 (1.440) | 112 (1.440) | 65/98 | 0.0 | 53.6% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 81 (1.040) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||
Only 100 of 121 total aligned reads displayed.
ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4034705‑4034655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < REL606/4034991‑4034942 ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT < 1:5526587/51‑1ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT < 1:5970930/51‑1ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT > 1:2783394/1‑51ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT < 1:5876476/51‑1ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT > 1:5525531/1‑51 TCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTG < 1:3650223/51‑1 CTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGT < 1:345840/51‑1 TCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTT > 1:584857/1‑51 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC > 1:3126615/1‑51 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC > 1:2866793/1‑51 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC > 1:89802/1‑51 CTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTC < 1:4646162/51‑1 TGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCA < 1:1632959/51‑1 TGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCA > 1:1240503/1‑51 GCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCAC < 1:3379737/51‑1 GCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCAC < 1:3963917/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:5640623/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG < 1:3505165/51‑1 ATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTG > 1:6728273/1‑51 GGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGAC < 1:2503665/51‑1 GGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACG < 1:1379264/51‑1 GGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACG < 1:6379144/51‑1 GGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACG < 1:6826871/51‑1 GCTTTTTTCTCCGTTAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:5071736/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:3976199/51‑1 GCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGA < 1:5737747/51‑1 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA < 1:3737941/51‑1 CTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAA > 1:1370421/1‑51 TTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAG < 1:2298580/51‑1 TTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAG < 1:2502667/51‑1 TTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGC > 1:5274736/1‑51 TTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAA > 1:1498113/1‑51 TTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAA > 1:1421566/1‑51 CTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTG > 1:5218225/1‑51 CTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTG < 1:886829/51‑1 CTCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTG > 1:3742675/1‑51 TCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGA < 1:3721517/51‑1 TCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGA > 1:2283170/1‑51 TCCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGA < 1:6631410/51‑1 CCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGAT < 1:775151/51‑1 CCGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGAT > 1:321091/1‑51 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:3338489/1‑51 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:4454334/1‑51 CGTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATG > 1:885652/1‑51 GTCAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGC > 1:5108481/1‑51 CAATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGT > 1:5206940/1‑51 AATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTA < 1:736678/51‑1 ATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTAC < 1:835730/51‑1 ATTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTA < 1:5042817/50‑1 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA > 1:5635737/1‑51 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA < 1:1162999/51‑1 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA < 1:6984981/51‑1 TTCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACA > 1:6872628/1‑51 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT < 1:176468/51‑1 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT < 1:5909802/51‑1 TCTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACAT < 1:6294020/51‑1 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC < 1:924001/51‑1 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC < 1:6324589/51‑1 CTCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATC > 1:6033629/1‑51 aCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:5662748/2‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:5662749/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:2700038/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:6655609/1‑51 TCTGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCG > 1:1831703/1‑51 TGATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCT > 1:4699325/1‑51 GATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTC < 1:3719779/51‑1 ATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCT < 1:330961/51‑1 ATGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCT < 1:5589328/51‑1 TGCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTG < 1:3290692/51‑1 GCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGC > 1:6520693/1‑51 GCTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGC < 1:423229/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG > 1:2225878/1‑51 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG < 1:5775565/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG < 1:5479821/51‑1 CTTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCG > 1:4497616/1‑51 TTCGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGT < 1:1078434/51‑1 CGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCG < 1:5208779/51‑1 CGCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCG < 1:6443000/51‑1 GCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGC > 1:1327928/1‑51 GCGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGC < 1:3567762/51‑1 CGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCG < 1:2049042/51‑1 CGCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCG > 1:6664180/1‑51 GCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGA > 1:6942643/1‑51 GCTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGA < 1:1894506/51‑1 CTTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAA < 1:3975147/51‑1 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAG > 1:7211709/1‑51 TTTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAG > 1:1211036/1‑51 TTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGA > 1:3328505/1‑51 TTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGA > 1:1753046/1‑51 TTTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGA < 1:4019800/51‑1 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA < 1:7134077/51‑1 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:621466/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:4521760/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:433457/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA < 1:804033/51‑1 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:5146592/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:5770759/1‑51 TTGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAA > 1:6104788/1‑51 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < 1:3593862/51‑1 TGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < 1:5489255/51‑1 ATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4034705‑4034655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCACTGACGAAGCAATTGATGCGTACATCGCTCTGCGTCGCGAAGAAG < REL606/4034991‑4034942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |