| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4034655 = | 115 (1.440) | 112 (1.440) | 65/98 | 0.0 | 53.6% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 81 (1.040) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||
Only 100 of 236 total aligned reads displayed.
TCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAT > REL606/4034605‑4034705 | tctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaa > 1:6476218/1‑51 (MQ=255)tctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaa > 1:4978069/1‑51 (MQ=255)cttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaaca < 1:3128934‑M1/1‑1 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa > 1:433457‑M1/50‑51 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa > 1:5770759‑M1/50‑51 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa > 1:6104788‑M1/50‑51 (MQ=255) ttcttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaa > 1:5146592‑M1/50‑51 (MQ=255) ctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaa > 1:4243777/1‑51 (MQ=255) ctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaa > 1:6640231/1‑51 (MQ=255) ctcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaa < 1:4201926/50‑1 (MQ=255) tcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaa < 1:3091279/51‑1 (MQ=255) tcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaa > 1:4186321/1‑51 (MQ=255) tcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaa > 1:2199755/1‑51 (MQ=255) cttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacaaaa > 1:884549‑M1/48‑51 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGCTaaaaa < 1:5128159/51‑1 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 1:3641170/51‑1 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 1:3940167/51‑1 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa > 1:5735495/1‑51 (MQ=255) ccTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 1:4728687/51‑1 (MQ=255) ttcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAg < 1:3975147‑M1/5‑1 (MQ=255) cTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAg > 1:2063804/1‑51 (MQ=255) tcgcgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAgc > 1:6942643‑M1/46‑51 (MQ=255) gAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAgcg < 1:1630264/51‑1 (MQ=255) cgacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGcgcg < 1:5208779‑M1/9‑1 (MQ=255) aCAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGcgcg < 1:3561107/51‑1 (MQ=255) aCAGGTTGCACCATTTTAGTGCATTATAGATTTTTACGGATAAAAAGcgcg > 1:4071554/1‑51 (MQ=255) gacgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGa > 1:6446351‑M1/42‑51 (MQ=255) cAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGa > 1:5854251/1‑51 (MQ=255) ggTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAg < 1:5387177/51‑1 (MQ=255) cgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAg > 1:4497616‑M1/40‑51 (MQ=255) cgcagagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAg < 1:4154497‑M1/12‑1 (MQ=255) gTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGc < 1:6563322/51‑1 (MQ=255) ttGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCa < 1:5945913/51‑1 (MQ=255) tGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCAt > 1:1008357/1‑51 (MQ=255) agagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCAt < 1:330961‑M1/15‑1 (MQ=255) agagcgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCAt < 1:5589328‑M1/15‑1 (MQ=255) gCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATc < 1:6045343/51‑1 (MQ=255) gCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATc > 1:5329126/1‑51 (MQ=255) gCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATc > 1:775348/1‑51 (MQ=255) cACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCa < 1:2479726/51‑1 (MQ=255) aCCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCag > 1:2219911/1‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:6655609‑M1/33‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:5662749‑M1/33‑51 (MQ=255) cgatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCaga > 1:1831703‑M1/33‑51 (MQ=255) gatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCagag < 1:924001‑M1/20‑1 (MQ=255) gatgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCagag < 1:6324589‑M1/20‑1 (MQ=255) cATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCagag > 1:1691848/1‑51 (MQ=255) atgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAgaga < 1:6294020‑M1/21‑1 (MQ=255) atgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAgaga < 1:176468‑M1/21‑1 (MQ=255) aTTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAgaga > 1:4479551/1‑51 (MQ=255) tgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGaa < 1:6984981‑M1/22‑1 (MQ=255) tgtacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGaa < 1:1162999‑M1/22‑1 (MQ=255) tttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAAt < 1:5526873/51‑1 (MQ=255) ttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAAtt < 1:6372254/51‑1 (MQ=255) ttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAAtt < 1:4022405/51‑1 (MQ=255) ttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAAtt < 1:6012065/51‑1 (MQ=255) tacgcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAAt < 1:5042817‑M1/23‑1 (MQ=255) tAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTg < 1:5467976/51‑1 (MQ=255) gcatcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGAc > 1:5108481‑M1/25‑51 (MQ=255) catcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACg > 1:6735124‑M1/24‑51 (MQ=255) catcaattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACg > 1:3338489‑M1/24‑51 (MQ=255) gCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACgg > 1:3729630/1‑51 (MQ=255) cATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGga < 1:7138501/51‑1 (MQ=255) cATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGga < 1:2042780/51‑1 (MQ=255) aTTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgag > 1:4443900/1‑51 (MQ=255) aTTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgag > 1:7258558/1‑51 (MQ=255) ttATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGgaga < 1:2228067/51‑1 (MQ=255) aattgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGgaga < 1:1361897‑M1/32‑1 (MQ=255) tataGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaa > 1:2671547/1‑51 (MQ=255) tataGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaa < 1:6134477/51‑1 (MQ=255) ttgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:1421566‑M1/18‑51 (MQ=255) ttgcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:1498113‑M1/18‑51 (MQ=255) ataGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaa > 1:7040367/1‑51 (MQ=255) gcttcgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaaa < 1:3601666‑M1/36‑1 (MQ=255) gCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaaaaaa > 1:4739611/1‑51 (MQ=255) tttttAGGAATAAAAGGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAg < 1:828134/50‑1 (MQ=255) tttttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGc > 1:3574182/1‑51 (MQ=255) ttttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGaa < 1:3495191/44‑1 (MQ=255) cgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGcc < 1:6826871‑M1/40‑1 (MQ=255) cgtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGcc < 1:1379264‑M1/40‑1 (MQ=255) tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc < 1:3792557/51‑1 (MQ=255) tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc > 1:2454378/1‑51 (MQ=255) tttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc < 1:584495/51‑1 (MQ=255) gtcagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGccc < 1:2503665‑M1/41‑1 (MQ=255) ttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCa > 1:3741947/1‑51 (MQ=255) tACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCAt < 1:2838482/51‑1 (MQ=255) cagtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCAt < 1:5640623‑M1/43‑1 (MQ=255) agtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATg < 1:7211564‑M1/44‑1 (MQ=255) gtgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGc < 1:3379737‑M1/45‑1 (MQ=255) cGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATg < 1:3666052/50‑1 (MQ=255) cGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGc < 1:4523094/51‑1 (MQ=255) tgaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCa > 1:1240503‑M1/6‑51 (MQ=255) gaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCag < 1:4646162‑M1/47‑1 (MQ=255) gaacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCag > 1:89802‑M1/5‑51 (MQ=255) aacAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCaga > 1:5898977‑M1/4‑51 (MQ=255) aTAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCaga > 1:1599290/1‑51 (MQ=255) tAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCagag > 1:666501/1‑51 (MQ=255) aaaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAgaga > 1:6258469/1‑51 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt > 1:2783394‑M1/1‑51 (MQ=255) AAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAt > 1:5525531‑M1/1‑51 (MQ=255) | TCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGAT > REL606/4034605‑4034705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |