| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,415,710 | IS150 (–) +3 bp | coding (848‑850/1413 nt) | cycA → | D‑alanine/D‑serine/glycine transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3893554 = | NA (NA) | 79 (0.990) | 57/100 | 0.1 | 94.9% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 4415710 = | 4 (0.050) | coding (848/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | REL606 | = 3894996 | NA (NA) | 96 (1.230) | 56/98 | 0.1 | 95.7% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 4415712 | 4 (0.050) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
Only 100 of 186 total aligned reads displayed.
TTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAA > REL606/4415662‑4415761 | ttATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTttg < 1:3837798/51‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg > 1:1012812‑M2/49‑51 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:846125‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:1872996‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:712536‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:475518‑M2/3‑1 (MQ=255)tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:1829456‑M2/3‑1 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:1548043‑M2/48‑51 (MQ=255) tGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgt < 1:3736119‑M2/51‑4 (MQ=255) gggctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAAc > 1:1493731‑M2/43‑51 (MQ=255) ccGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtact < 1:4455749‑M2/51‑7 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:6781835‑M2/1‑44 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTg < 1:3629721‑M2/11‑1 (MQ=255) ctattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGt < 1:1521436‑M2/12‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt > 1:7022859‑M2/39‑51 (MQ=255) gACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacc < 1:7091927‑M2/51‑11 (MQ=255) gACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacc < 1:5790439‑M2/51‑11 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc < 1:4717458‑M2/51‑13 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt > 1:5870394‑M2/36‑51 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:4162709‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2864877‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2836258‑M2/51‑14 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtg > 1:6466047‑M2/35‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt > 1:6045790‑M2/34‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgtgt > 1:214186‑M2/34‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt < 1:6685894‑M2/16‑1 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa > 1:177481‑M2/1‑36 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:1127326‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:6132263‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:2692537‑M2/1‑35 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGtt > 1:6285778‑M2/33‑51 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa < 1:6774271‑M2/51‑18 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:2960435‑M2/1‑34 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg > 1:4242162‑M2/31‑51 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg > 1:7265925‑M2/31‑51 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg > 1:4081904‑M2/31‑51 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag > 1:178839‑M2/1‑33 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt < 1:5330294‑M2/51‑20 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt > 1:2946277‑M2/1‑32 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt > 1:2497803‑M2/1‑32 (MQ=255) catcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTa > 1:3079897‑M2/29‑51 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:700303‑M2/1‑30 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:3975478‑M2/1‑30 (MQ=255) ttCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAgg > 1:523965/1‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg > 1:870007‑M2/27‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg < 1:3335620‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg > 1:2588273‑M2/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg < 1:4951092‑M2/26‑1 (MQ=255) gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGc > 1:6354726‑M2/25‑51 (MQ=255) ggTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggaca > 1:2398037‑M2/1‑26 (MQ=255) gTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacag < 1:5365080‑M2/51‑27 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagt < 1:1343082‑M2/51‑28 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagt > 1:5579121‑M2/1‑24 (MQ=255) gTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagtta > 1:3904176‑M2/1‑22 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa > 1:5972730‑M2/1‑20 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:4921063/1‑51 (MQ=255) aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:1006969‑M2/18‑51 (MQ=255) aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:4193922‑M2/18‑51 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaac < 1:545919‑M2/51‑33 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:5921422‑M2/1‑19 (MQ=255) cGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaaca < 1:580272‑M2/51‑34 (MQ=255) aatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgctg < 1:1274952‑M2/36‑1 (MQ=255) ggAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacac < 1:5064221‑M2/51‑35 (MQ=255) ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCtgctgc > 1:1703186/1‑51 (MQ=255) gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa < 1:4086696‑M2/46‑31 (MQ=255) gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa < 1:5462772‑M2/46‑31 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:5731531‑M2/39‑1 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:6754873‑M2/39‑1 (MQ=255) agaAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg > 1:5912632/1‑51 (MQ=255) ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc < 1:4369537‑M2/40‑1 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:4863082‑M2/1‑14 (MQ=255) gtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCa < 1:1105861‑M2/41‑1 (MQ=255) aaaaGCCCGTTTGtgtactgcccccaaaaagtggacagttaaacacg > 1:457353‑M2/1‑13 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:4988386‑M2/51‑39 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:6234241‑M2/51‑39 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg > 1:6942108‑M2/1‑13 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:6650978‑M2/1‑12 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:5875188‑M2/1‑12 (MQ=255) gcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAg < 1:3473925‑M2/43‑1 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg > 1:6526445‑M2/8‑46 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:1810576‑M2/44‑1 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:7056622‑M2/44‑1 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:3249387‑M2/7‑51 (MQ=255) gtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTACCTGCTGCCGCAAGCGt < 1:3165271‑M2/46‑1 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg > 1:6425800‑M2/5‑51 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:5657244‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4296382‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1723281‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4676139‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:2234089‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:5018712‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:3441975‑M2/51‑45 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:1980855‑M2/1‑6 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:2626362‑M2/1‑6 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:5408308‑M2/51‑46 (MQ=255) gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:7205080‑M2/1‑5 (MQ=255) aTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATc > 1:6659936‑M2/2‑51 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:2762601/1‑51 (MQ=255) ttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc > 1:2948874‑M2/1‑3 (MQ=255) tgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCaa > 1:3459435/1‑51 (MQ=255) | TTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAA > REL606/4415662‑4415761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |