| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,415,710 | IS150 (–) +3 bp | coding (848‑850/1413 nt) | cycA → | D‑alanine/D‑serine/glycine transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3893554 = | NA (NA) | 79 (0.990) | 57/100 | 0.1 | 94.9% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 4415710 = | 4 (0.050) | coding (848/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | REL606 | = 3894996 | NA (NA) | 96 (1.230) | 56/98 | 0.1 | 95.7% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 4415712 | 4 (0.050) | coding (850/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
Only 100 of 189 total aligned reads displayed.
GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA > REL606/4415660‑4415760 | gATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGtt > 1:2396830/1‑51 (MQ=255) aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt < 1:1480966/51‑1 (MQ=255) aTTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGttt > 1:4587309/1‑51 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:5900866‑M2/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg > 1:1012812‑M2/49‑51 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:846125‑M2/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:712536‑M2/3‑1 (MQ=255) tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacattg < 1:1872996‑M2/3‑1 (MQ=255) tATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGt < 1:6096329‑M2/51‑2 (MQ=255) attaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgt > 1:1548043‑M2/48‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgtt > 1:218506‑M2/47‑51 (MQ=255) ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacattgtt > 1:701154‑M2/47‑51 (MQ=255) aTGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtg < 1:6993687‑M2/51‑3 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:6781835‑M2/1‑44 (MQ=255) cGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactg > 1:6437857‑M2/1‑44 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt < 1:502952‑M2/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGtt < 1:2524145‑M2/13‑1 (MQ=255) gACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacc < 1:7091927‑M2/51‑11 (MQ=255) aCGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccc < 1:4428547‑M2/51‑12 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg > 1:288059‑M2/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCg < 1:6039236‑M2/15‑1 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc > 1:6185680‑M2/1‑39 (MQ=255) cGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccc < 1:6654291‑M2/51‑13 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2116760‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:4162709‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2836258‑M2/51‑14 (MQ=255) gCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgacccca < 1:2864877‑M2/51‑14 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCgt < 1:6685894‑M2/16‑1 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa > 1:5644514‑M2/1‑36 (MQ=255) cGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaa < 1:433328‑M2/51‑16 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:5396305‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:1127326‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa > 1:2692537‑M2/1‑35 (MQ=255) gTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaa < 1:5965352‑M2/51‑17 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGtt > 1:6285778‑M2/33‑51 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa < 1:6774271‑M2/51‑18 (MQ=255) tGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaa > 1:2960435‑M2/1‑34 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg > 1:7265925‑M2/31‑51 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTgg < 1:2948766‑M2/21‑1 (MQ=255) ggAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaag < 1:3519143‑M2/51‑19 (MQ=255) gAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagt > 1:5919177‑M2/1‑32 (MQ=255) catcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTa > 1:3079897‑M2/29‑51 (MQ=255) catcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTa < 1:407370‑M2/23‑1 (MQ=255) aGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagtt < 1:52689‑M2/51‑21 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg < 1:5722966‑M2/51‑22 (MQ=255) gTTCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttg > 1:4694932‑M2/1‑30 (MQ=255) ttCGGTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttgg < 1:1819188‑M2/51‑23 (MQ=255) tcgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAgg > 1:870007‑M2/27‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg < 1:3335620‑M2/26‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAggg < 1:4951092‑M2/26‑1 (MQ=255) gtccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGc > 1:6354726‑M2/25‑51 (MQ=255) tccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGct < 1:477255‑M2/28‑1 (MQ=255) gTAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacag > 1:1707303‑M2/1‑25 (MQ=255) ccaacaaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctg > 1:3752562‑M2/23‑51 (MQ=255) tAGTCCCGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagt < 1:1343082‑M2/51‑28 (MQ=255) cccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaa < 1:4740328‑M2/51‑32 (MQ=255) cccGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:4921063/1‑51 (MQ=255) aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:1006969‑M2/18‑51 (MQ=255) aaaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGctgcctgc > 1:4193922‑M2/18‑51 (MQ=255) ccGGAGAAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaac < 1:545919‑M2/51‑33 (MQ=255) aaatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgct < 1:5837640‑M2/35‑1 (MQ=255) aatgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCctgctg < 1:1274952‑M2/36‑1 (MQ=255) ggAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCtgctgc > 1:1703186/1‑51 (MQ=255) atgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCtgctgc > 1:3842774‑M2/15‑51 (MQ=255) tgggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGcc < 1:5746875‑M2/38‑1 (MQ=255) gagaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaa < 1:4086696‑M2/46‑31 (MQ=255) gggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCg < 1:6754873‑M2/39‑1 (MQ=255) ggtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc < 1:6476915‑M2/40‑1 (MQ=255) gaAAAGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag > 1:4863082‑M2/1‑14 (MQ=255) gtgcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCa < 1:1105861‑M2/41‑1 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg > 1:6942108‑M2/1‑13 (MQ=255) aaaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgagg < 1:4988386‑M2/51‑39 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:5875188‑M2/1‑12 (MQ=255) aaaGCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgag < 1:3933976‑M2/49‑38 (MQ=255) gcagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAg < 1:3473925‑M2/43‑1 (MQ=255) cagtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGc < 1:7056622‑M2/44‑1 (MQ=255) gCCCGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcata < 1:5097525‑M2/51‑43 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:5474161‑M2/7‑51 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:6566277‑M2/7‑51 (MQ=255) agtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCg > 1:3249387‑M2/7‑51 (MQ=255) gtacaTTGTTGAACTGTTCGTGTTGGTAGGGCTACCTGCTGCCGCAAGCGt < 1:3165271‑M2/46‑1 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGTTGCCTGCTGCCGCAAGCGTg > 1:5802353‑M2/5‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg > 1:6425800‑M2/5‑51 (MQ=255) tacaTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTg < 1:4508527‑M2/47‑1 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:3441975‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:1501661‑M2/1‑7 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:2234089‑M2/51‑45 (MQ=255) ccGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:4204235‑M2/51‑45 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:1980855‑M2/1‑6 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:2626362‑M2/1‑6 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:5408308‑M2/51‑46 (MQ=255) cGTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:1760711‑M2/51‑46 (MQ=255) gTTTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:7205080‑M2/1‑5 (MQ=255) caTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGAt < 1:5339047‑M2/49‑1 (MQ=255) tttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:4292011‑M2/51‑48 (MQ=255) tttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:2482721‑M2/51‑48 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:2762601/1‑51 (MQ=255) ttgttgAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCa > 1:1787245/1‑51 (MQ=255) ttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 1:1807288‑M2/51‑49 (MQ=255) ttGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc < 1:3637668‑M2/51‑49 (MQ=255) | GATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCA > REL606/4415660‑4415760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |