| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,482,398 | Δ25 bp | coding (714‑738/2706 nt) | malT → | transcriptional regulator MalT |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3482398 | 3482422 | 25 | 86 [0] | [0] 87 | malT | transcriptional regulator MalT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3482397 | 0 (0.000) | 86 (1.080) | 56/100 | 0.1 | 100% | coding (713/2706 nt) | malT | transcriptional regulator MalT |
| ? | REL606 | 3482423 = | 0 (0.000) | coding (739/2706 nt) | malT | transcriptional regulator MalT | |||||
GGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACGTC > REL606/3482373‑3482473 | ctacagctaatcgccctctccgcccggcagaatacccactcagcccataaa < 1:4074017‑M2/1‑1 (MQ=255)ctacagctaatcgccctctccgcccggcagaatacccactcagcccataaa > 1:3711632‑M2/51‑51 (MQ=255)ctacagctaatcgccctctccgcccggcagaatacccactcagcccataaa < 1:3443775‑M2/1‑1 (MQ=255)ctacagctaatcgccctctccgcccggcagaatacccactcagcccataaa < 1:6715266‑M2/1‑1 (MQ=255)ctacagctaatcgccctctccgcccggcagaatacccactcagcccataaa < 1:6674529‑M2/1‑1 (MQ=255) tacagctaatcgccctctccgcccggcagaatacccactcagcccataaaa < 1:3545570‑M2/2‑1 (MQ=255) tacagctaatcgccctctccgcccggcagaatacccactcagcccataaaa > 1:5574620‑M2/50‑51 (MQ=255) acagctaatcgccctctccgcccggcagaatacccactcagcccataaAAt < 1:4795578‑M2/3‑1 (MQ=255) acagctaatcgccctctccgcccggcagaatacccactcagcccataaAAt < 1:6197904‑M2/3‑1 (MQ=255) acagctaatcgccctctccgcccggcagaatacccactcagcccataaAAt < 1:3090495‑M2/3‑1 (MQ=255) acagctaatcgccctctccgcccggcagaatacccactcagcccataaAAt < 1:96909‑M2/3‑1 (MQ=255) acagctaatcgccctctccgcccggcagaatacccactcagcccataaAAt > 1:3089801‑M2/49‑51 (MQ=255) ctaattgccctctccgcccggcagaatacccactcagcccataaAATgcca > 1:4659355‑M2/45‑51 (MQ=255) ctaatcgccctctccgcccggcagaatacccactcagcccataaAATgcca < 1:1823080‑M2/7‑1 (MQ=255) ctaatcgccctctccgcccggcagaatacccactcagcccataaAATgcca < 1:5461121‑M2/7‑1 (MQ=255) ctaatcgccctctccgcccggcagaatacccactcagcccataaAATgcca < 1:500067‑M2/7‑1 (MQ=255) aatcgccctctccgcccggcagaatacccactcagcccataaAATgccagc < 1:1688997‑M2/9‑1 (MQ=255) tcgccctctccgcccggcagaatacccactcagcccataaAATgccagcca < 1:3203014‑M2/11‑1 (MQ=255) cgccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCAt < 1:4817858‑M2/12‑1 (MQ=255) cgccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCAt < 1:5620988‑M2/12‑1 (MQ=255) cgccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCAt > 1:1204110‑M2/40‑51 (MQ=255) cgccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCAt < 1:5423310‑M2/12‑1 (MQ=255) gccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATc < 1:4166070‑M2/13‑1 (MQ=255) gccctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATc > 1:4023598‑M2/39‑51 (MQ=255) cctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCtt < 1:127474‑M2/15‑1 (MQ=255) cctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCtt > 1:1587024‑M2/37‑51 (MQ=255) cctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCtt < 1:2022854‑M2/15‑1 (MQ=255) ctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCttt < 1:3911900‑M2/16‑1 (MQ=255) ctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCttt < 1:1008253‑M2/16‑1 (MQ=255) ctctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCttt < 1:1352796‑M2/16‑1 (MQ=255) tctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTc < 1:998384‑M2/17‑1 (MQ=255) tctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTc > 1:6962591‑M2/35‑51 (MQ=255) ctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCg < 1:922148‑M2/18‑1 (MQ=255) ctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCg < 1:5536470‑M2/18‑1 (MQ=255) ctccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCg < 1:5443816‑M2/18‑1 (MQ=255) tccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCgg > 1:4300491‑M2/33‑51 (MQ=255) tccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCgg > 1:6798550‑M2/33‑51 (MQ=255) tccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCgg < 1:5179512‑M2/19‑1 (MQ=255) tccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCgg < 1:79259‑M2/19‑1 (MQ=255) tccgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCgg > 1:2487315‑M2/33‑51 (MQ=255) cgcccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGAt > 1:1685605‑M2/31‑51 (MQ=255) cccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTa < 1:7108401‑M2/23‑1 (MQ=255) cccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTa > 1:100767‑M2/29‑51 (MQ=255) ccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTAt > 1:3392860‑M2/28‑51 (MQ=255) ccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTAt < 1:935489‑M2/24‑1 (MQ=255) ccggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTAt > 1:6525783‑M2/28‑51 (MQ=255) cggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTATc > 1:1898042‑M2/27‑51 (MQ=255) ggcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCt < 1:2279443‑M2/26‑1 (MQ=255) gcagaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTg > 1:4706819‑M2/25‑51 (MQ=255) cagaatacccactcagcccataaAATGCCAGCTATCTTTCGGATTATCTgg > 1:2610674‑M2/24‑51 (MQ=255) agaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGt > 1:5653263‑M2/23‑51 (MQ=255) agaatacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGt < 1:1138229‑M2/29‑1 (MQ=255) atacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGa < 1:6281906‑M2/32‑1 (MQ=255) atacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGa < 1:4027169‑M2/32‑1 (MQ=255) tacccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGAt < 1:6589388‑M2/33‑1 (MQ=255) acccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATg > 1:2617190‑M2/18‑51 (MQ=255) cccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATNa < 1:1983335‑M2/35‑1 (MQ=255) ccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAg < 1:6946101‑M2/36‑1 (MQ=255) ccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAg > 1:4857404‑M2/16‑51 (MQ=255) ccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAg < 1:1281165‑M2/36‑1 (MQ=255) ccactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAg < 1:2902981‑M2/36‑1 (MQ=255) cactcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAgg < 1:5673844‑M2/37‑1 (MQ=255) ctcagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAg < 1:4470921‑M2/36‑1 (MQ=255) cagcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGtttt < 1:536316‑M2/41‑1 (MQ=255) agcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTg > 1:1928‑M2/10‑51 (MQ=255) gcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTgg < 1:3555017‑M2/43‑1 (MQ=255) gcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTgg < 1:2435073‑M2/43‑1 (MQ=255) gcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTgg > 1:864930‑M2/9‑51 (MQ=255) gcccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTgg < 1:2045379‑M2/43‑1 (MQ=255) cccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGa > 1:4595542‑M2/8‑51 (MQ=255) cccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGa < 1:3255170‑M2/44‑1 (MQ=255) ccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGAt > 1:137687‑M2/7‑51 (MQ=255) ccataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGAt < 1:3283383‑M2/45‑1 (MQ=255) cataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATa < 1:3491434‑M2/46‑1 (MQ=255) cataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATa < 1:5505325‑M2/46‑1 (MQ=255) ataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATaa > 1:6741041‑M2/5‑51 (MQ=255) ataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATaa < 1:6548572‑M2/47‑1 (MQ=255) ataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATaa < 1:4151773‑M2/47‑1 (MQ=255) ataaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATaa > 1:3660536‑M2/5‑51 (MQ=255) taaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAAc < 1:5742136‑M2/48‑1 (MQ=255) taaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAAc < 1:3154690‑M2/48‑1 (MQ=255) aaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACg < 1:6773584‑M2/49‑1 (MQ=255) aaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACg > 1:3398469‑M2/3‑51 (MQ=255) aaAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACg < 1:386761‑M2/49‑1 (MQ=255) aAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACGt > 1:1072688‑M2/2‑51 (MQ=255) aAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACGt < 1:5472493‑M2/50‑1 (MQ=255) aaTGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACGTc < 1:1882140/51‑1 (MQ=255) | GGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATCTGGTCGATGAGGTTTTGGATAACGTC > REL606/3482373‑3482473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |