| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,482,398 | Δ25 bp | coding (714‑738/2706 nt) | malT → | transcriptional regulator MalT |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3482398 | 3482422 | 25 | 86 [0] | [0] 87 | malT | transcriptional regulator MalT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3482397 | 0 (0.000) | 86 (1.080) | 56/100 | 0.1 | 100% | coding (713/2706 nt) | malT | transcriptional regulator MalT |
| ? | REL606 | 3482423 = | 0 (0.000) | coding (739/2706 nt) | malT | transcriptional regulator MalT | |||||
CTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATC > REL606/3482348‑3482447 | cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa < 1:6674529‑M1/51‑2 (MQ=255)cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa < 1:6715266‑M1/51‑2 (MQ=255)cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa > 1:3711632‑M1/1‑50 (MQ=255)cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa < 1:4074017‑M1/51‑2 (MQ=255)cTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAa < 1:3443775‑M1/51‑2 (MQ=255) tACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaa > 1:5574620‑M1/1‑49 (MQ=255) tACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaa < 1:3545570‑M1/51‑3 (MQ=255) aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat < 1:96909‑M1/51‑4 (MQ=255) aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat > 1:3089801‑M1/1‑48 (MQ=255) aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat < 1:6197904‑M1/51‑4 (MQ=255) aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat < 1:3090495‑M1/51‑4 (MQ=255) aCAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaat < 1:4795578‑M1/51‑4 (MQ=255) cTAATTGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca > 1:4659355‑M1/1‑44 (MQ=255) cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca < 1:1823080‑M1/51‑8 (MQ=255) cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca < 1:5461121‑M1/51‑8 (MQ=255) cTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgcca < 1:500067‑M1/51‑8 (MQ=255) aaTCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagc < 1:1688997‑M1/51‑10 (MQ=255) tCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagcca < 1:3203014‑M1/51‑12 (MQ=255) cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat > 1:1204110‑M1/1‑39 (MQ=255) cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat < 1:5620988‑M1/51‑13 (MQ=255) cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat < 1:4817858‑M1/51‑13 (MQ=255) cGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccat < 1:5423310‑M1/51‑13 (MQ=255) gCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatc < 1:4166070‑M1/51‑14 (MQ=255) gCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatc > 1:4023598‑M1/1‑38 (MQ=255) ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt < 1:2022854‑M1/51‑16 (MQ=255) ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt > 1:1587024‑M1/1‑36 (MQ=255) ccTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctt < 1:127474‑M1/51‑16 (MQ=255) ctctCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatcttt < 1:1008253‑M1/51‑17 (MQ=255) ctctCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatcttt < 1:3911900‑M1/51‑17 (MQ=255) ctctCCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatcttt < 1:1352796‑M1/51‑17 (MQ=255) tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc < 1:998384‑M1/51‑18 (MQ=255) tctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttc > 1:6962591‑M1/1‑34 (MQ=255) ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg < 1:5443816‑M1/51‑19 (MQ=255) ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg < 1:5536470‑M1/51‑19 (MQ=255) ctcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcg < 1:922148‑M1/51‑19 (MQ=255) tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg > 1:4300491‑M1/1‑32 (MQ=255) tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg > 1:2487315‑M1/1‑32 (MQ=255) tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg > 1:6798550‑M1/1‑32 (MQ=255) tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg < 1:79259‑M1/51‑20 (MQ=255) tcCGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcgg < 1:5179512‑M1/51‑20 (MQ=255) cGCCCGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggat > 1:1685605‑M1/1‑30 (MQ=255) cccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggatta > 1:100767‑M1/1‑28 (MQ=255) cccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggatta < 1:7108401‑M1/51‑24 (MQ=255) ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat > 1:6525783‑M1/1‑27 (MQ=255) ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat < 1:935489‑M1/51‑25 (MQ=255) ccGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattat > 1:3392860‑M1/1‑27 (MQ=255) cGGCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatc > 1:1898042‑M1/1‑26 (MQ=255) ggCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatct < 1:2279443‑M1/51‑27 (MQ=255) gCAGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctg > 1:4706819‑M1/1‑24 (MQ=255) cAGAATACCCACTCAGCCCATAAaatgccagctatctttcggattatctgg > 1:2610674‑M1/1‑23 (MQ=255) aGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggt < 1:1138229‑M1/51‑30 (MQ=255) aGAATACCCACTCAGCCCATAAaatgccagccatctttcggattatctggt > 1:5653263‑M1/1‑22 (MQ=255) aTACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcga < 1:4027169‑M1/51‑33 (MQ=255) aTACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcga < 1:6281906‑M1/51‑33 (MQ=255) tACCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgat < 1:6589388‑M1/51‑34 (MQ=255) aCCCACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatg > 1:2617190‑M1/1‑17 (MQ=255) cccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatna < 1:1983335‑M1/51‑36 (MQ=255) ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag < 1:6946101‑M1/51‑37 (MQ=255) ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag < 1:2902981‑M1/51‑37 (MQ=255) ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag < 1:1281165‑M1/51‑37 (MQ=255) ccACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag > 1:4857404‑M1/1‑15 (MQ=255) cACTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgagg < 1:5673844‑M1/51‑38 (MQ=255) cTCAGCCCATAAaatgccagccatctttcggattatctggtcgatgag < 1:4470921‑M1/48‑37 (MQ=255) cAGCCCATAAaatgccagccatctttcggattatctggtcgatgaggtttt < 1:536316‑M1/51‑42 (MQ=255) aGCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttg > 1:1928‑M1/1‑9 (MQ=255) gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg > 1:864930‑M1/1‑8 (MQ=255) gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg < 1:3555017‑M1/51‑44 (MQ=255) gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg < 1:2045379‑M1/51‑44 (MQ=255) gCCCATAAaatgccagccatctttcggattatctggtcgatgaggttttgg < 1:2435073‑M1/51‑44 (MQ=255) cccATAAaatgccagccatctttcggattatctggtcgatgaggttttgga > 1:4595542‑M1/1‑7 (MQ=255) cccATAAaatgccagccatctttcggattatctggtcgatgaggttttgga < 1:3255170‑M1/51‑45 (MQ=255) ccATAAaatgccagccatctttcggattatctggtcgatgaggttttggat > 1:137687‑M1/1‑6 (MQ=255) ccATAAaatgccagccatctttcggattatctggtcgatgaggttttggat < 1:3283383‑M1/51‑46 (MQ=255) cATAAaatgccagccatctttcggattatctggtcgatgaggttttggata < 1:5505325‑M1/51‑47 (MQ=255) cATAAaatgccagccatctttcggattatctggtcgatgaggttttggata < 1:3491434‑M1/51‑47 (MQ=255) aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa < 1:4151773‑M1/51‑48 (MQ=255) aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa > 1:6741041‑M1/1‑4 (MQ=255) aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa < 1:6548572‑M1/51‑48 (MQ=255) aTAAaatgccagccatctttcggattatctggtcgatgaggttttggataa > 1:3660536‑M1/1‑4 (MQ=255) tAAaatgccagccatctttcggattatctggtcgatgaggttttggataac < 1:3154690‑M1/51‑49 (MQ=255) tAAaatgccagccatctttcggattatctggtcgatgaggttttggataac < 1:5742136‑M1/51‑49 (MQ=255) aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg < 1:6773584‑M1/51‑50 (MQ=255) aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg > 1:3398469‑M1/1‑2 (MQ=255) aaaatgccagccatctttcggattatctggtcgatgaggttttggataacg < 1:386761‑M1/51‑50 (MQ=255) aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt < 1:5472493‑M1/51‑51 (MQ=255) aaatgccagccatctttcggattatctggtcgatgaggttttggataacgt > 1:1072688‑M1/1‑1 (MQ=255) | CTACAGCTAATCGCCCTCTCCGCCCGGCAGAATACCCACTCAGCCCATAAGTCGGCACGCCGCCTGGCGGGAATCAATGCCAGCCATCTTTCGGATTATC > REL606/3482348‑3482447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |