| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,974,040 | Δ8,273 bp | IS1‑mediated | [yedU]–[yeeI] | [yedU], yedV, yedW, yedX, yedY, yedZ, yodA, yodB, serU, [yeeI] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1973304–1974039 | 1982312 | 8274–9009 | 34 [32] | [1] 74 | insA‑13–[yeeI] | insA‑13,insB‑13,yedU,yedV,yedW,yedX,yedY,yedZ,yodA,yodB,serU,[yeeI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1974039 | NA (NA) | 73 (0.920) | 49/100 | 0.4 | 98.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | REL606 | 1982313 = | 1 (0.010) | coding (664/798 nt) | yeeI | hypothetical protein | |||||
TGCCAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT > REL606/1982264‑1982362 | cgggcattatctgaacataaaacactatcaataagttggagtcattaccAg < 1:6196500‑M2/2‑1 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccAgc > 1:182212‑M2/49‑51 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccAgc < 1:1188058‑M2/3‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccAgcg > 1:233420‑M2/48‑51 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccAgcg < 1:5028880‑M2/4‑1 (MQ=255) ccAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAgcg > 1:1189130/1‑51 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccAgcgc > 1:2751678‑M2/47‑51 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccAGCGcc > 1:3329234‑M2/46‑51 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccAGCGcc > 1:1008426‑M2/46‑51 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccAGCGccc > 1:4682073‑M2/45‑51 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccAGCGccc > 1:2804356‑M2/45‑51 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccAGCGccc < 1:1515630‑M2/7‑1 (MQ=255) tatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCa > 1:2798851‑M2/43‑51 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAg < 1:1452184‑M2/10‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGa > 1:6217084‑M2/41‑51 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGa > 1:222290‑M2/41‑51 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGa > 1:808947‑M2/41‑51 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGaa < 1:5723445‑M2/12‑1 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGaa < 1:3245647‑M2/12‑1 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGaa < 1:5767743‑M2/12‑1 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGaa > 1:332875‑M2/40‑51 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAAc > 1:3202435‑M2/39‑51 (MQ=255) gaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACt > 1:5903996‑M2/38‑51 (MQ=255) aacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACtt > 1:4822861‑M2/37‑51 (MQ=255) acataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACttt > 1:4748143‑M2/36‑51 (MQ=255) acataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACttt > 1:2374903‑M2/36‑51 (MQ=255) cataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACtttt < 1:1147173‑M2/17‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACtttt > 1:6019114‑M2/35‑51 (MQ=255) cataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACtttt < 1:2172790‑M2/17‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACttttt > 1:843407‑M2/34‑51 (MQ=255) ataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACttttt > 1:83351‑M2/34‑51 (MQ=255) ataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACttttt < 1:1250196‑M2/18‑1 (MQ=255) aaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGc > 1:4068990‑M2/32‑51 (MQ=255) ctatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCg > 1:1882364‑M2/26‑51 (MQ=255) tntcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGt > 1:4817775‑M2/25‑51 (MQ=255) tatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGt > 1:3149665‑M2/25‑51 (MQ=255) atcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGtt < 1:3773929‑M2/28‑1 (MQ=255) caataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTc > 1:5771546‑M2/22‑51 (MQ=255) caataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTc > 1:2423343‑M2/22‑51 (MQ=255) aataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTcc > 1:3963911‑M2/21‑51 (MQ=255) aataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTcc > 1:6566975‑M2/21‑51 (MQ=255) ataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTccc > 1:6148846‑M2/20‑51 (MQ=255) taagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCt > 1:5946799‑M2/19‑51 (MQ=255) taagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCt > 1:1116612‑M2/19‑51 (MQ=255) aagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCtt < 1:4651380‑M2/34‑1 (MQ=255) aagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCtt > 1:3389779‑M2/18‑51 (MQ=255) aagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCtt < 1:58994‑M2/34‑1 (MQ=255) agttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTc > 1:2365318‑M2/17‑51 (MQ=255) agttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTc > 1:6222643‑M2/17‑51 (MQ=255) ttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAt > 1:5848261‑M2/15‑51 (MQ=255) ttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAt > 1:6388930‑M2/15‑51 (MQ=255) tggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAtt < 1:2822013‑M2/38‑1 (MQ=255) tggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAtt > 1:5214777‑M2/14‑51 (MQ=255) ggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATtg > 1:6179273‑M2/13‑51 (MQ=255) ggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATtg < 1:746082‑M2/39‑1 (MQ=255) agtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATtgtg > 1:3433585‑M2/11‑51 (MQ=255) agtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATtgtg > 1:6781420‑M2/11‑51 (MQ=255) tcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGc < 1:6895830‑M2/43‑1 (MQ=255) tcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGc > 1:719945‑M2/9‑51 (MQ=255) cattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCa > 1:5824365‑M2/8‑51 (MQ=255) cattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCa > 1:3440301‑M2/8‑51 (MQ=255) attaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCaa < 1:5926969‑M2/45‑1 (MQ=255) attaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCaa < 1:1680598‑M2/45‑1 (MQ=255) attaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCaa > 1:1924762‑M2/7‑51 (MQ=255) ttaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAc > 1:3736944‑M2/6‑51 (MQ=255) ttaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAc < 1:365447‑M2/46‑1 (MQ=255) ttaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAc < 1:5024645‑M2/46‑1 (MQ=255) ttaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAc > 1:7117172‑M2/6‑51 (MQ=255) taccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACg > 1:3819920‑M2/5‑51 (MQ=255) taccAGCGCACCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACg > 1:1011860‑M2/5‑51 (MQ=255) cAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGttt < 1:4709880‑M2/50‑1 (MQ=255) cAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGttt < 1:6097765‑M2/50‑1 (MQ=255) cAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGttt > 1:2060726‑M2/2‑51 (MQ=255) cAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGttt < 1:5733089‑M2/50‑1 (MQ=255) | TGCCAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT > REL606/1982264‑1982362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |