| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,974,040 | Δ8,273 bp | IS1‑mediated | [yedU]–[yeeI] | [yedU], yedV, yedW, yedX, yedY, yedZ, yodA, yodB, serU, [yeeI] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1973304–1974039 | 1982312 | 8274–9009 | 34 [32] | [1] 74 | insA‑13–[yeeI] | insA‑13,insB‑13,yedU,yedV,yedW,yedX,yedY,yedZ,yodA,yodB,serU,[yeeI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1974039 | NA (NA) | 73 (0.920) | 49/100 | 0.4 | 98.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | REL606 | 1982313 = | 1 (0.010) | coding (664/798 nt) | yeeI | hypothetical protein | |||||
CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1973991‑1974039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT > REL606/1982313‑1982362 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAG < 1:6196500/51‑1 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC > 1:182212/1‑51 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC < 1:1188058/51‑1 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG < 1:5028880/51‑1 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCG > 1:233420/1‑51 GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGC > 1:2751678/1‑51 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCC > 1:3329234/1‑51 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCC > 1:1008426/1‑51 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC < 1:1515630/51‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC > 1:4682073/1‑51 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCC > 1:2804356/1‑51 TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCA > 1:2798851/1‑51 ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAG < 1:1452184/51‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA > 1:222290/1‑51 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA > 1:6217084/1‑51 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGA > 1:808947/1‑51 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA < 1:5723445/51‑1 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA > 1:332875/1‑51 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA < 1:3245647/51‑1 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAA < 1:5767743/51‑1 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAAC > 1:3202435/1‑51 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACT > 1:5903996/1‑51 AACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTT > 1:4822861/1‑51 ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT > 1:2374903/1‑51 ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTT > 1:4748143/1‑51 CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT > 1:6019114/1‑51 CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT < 1:2172790/51‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTT < 1:1147173/51‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT > 1:843407/1‑51 ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT > 1:83351/1‑51 ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTT < 1:1250196/51‑1 AAAACACTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGC > 1:4068990/1‑51 CTATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCG > 1:1882364/1‑51 TNTCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGT > 1:4817775/1‑51 TATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGT > 1:3149665/1‑51 ATCAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTT < 1:3773929/51‑1 CAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTC > 1:5771546/1‑51 CAATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTC > 1:2423343/1‑51 AATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCC > 1:3963911/1‑51 AATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCC > 1:6566975/1‑51 ATAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCC > 1:6148846/1‑51 TAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCT > 1:5946799/1‑51 TAAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCT > 1:1116612/1‑51 AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT < 1:4651380/51‑1 AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT > 1:3389779/1‑51 AAGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTT < 1:58994/51‑1 AGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTC > 1:2365318/1‑51 AGTTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTC > 1:6222643/1‑51 TTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAT > 1:5848261/1‑51 TTGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCAT > 1:6388930/1‑51 TGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATT < 1:2822013/51‑1 TGGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATT > 1:5214777/1‑51 GGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTG > 1:6179273/1‑51 GGAGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTG < 1:746082/51‑1 AGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTG > 1:3433585/1‑51 AGTCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTG > 1:6781420/1‑51 TCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGC < 1:6895830/51‑1 TCATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGC > 1:719945/1‑51 CATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCA > 1:5824365/1‑51 CATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCA > 1:3440301/1‑51 ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA < 1:5926969/51‑1 ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA < 1:1680598/51‑1 ATTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAA > 1:1924762/1‑51 TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC > 1:3736944/1‑51 TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC < 1:365447/51‑1 TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC < 1:5024645/51‑1 TTACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAAC > 1:7117172/1‑51 TACCAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG > 1:3819920/1‑51 TACCAGCGCACCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACG > 1:1011860/1‑51 CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT < 1:4709880/51‑1 CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT < 1:6097765/51‑1 CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT > 1:2060726/1‑51 CAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT < 1:5733089/51‑1 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1973991‑1974039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTT > REL606/1982313‑1982362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |