| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 499019 = | 80 (1.000) | 10 (0.140) | 6/92 | 8.6 | 13.8% | coding (3592/4281 nt) | rhsD | rhsD element protein |
| ? | REL606 | = 3099737 | 51 (0.700) | coding (409/2259 nt) | parC | DNA topoisomerase IV subunit A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCGGTGT > REL606/3099687‑3099787 | cTCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGccc < 1:7235007/51‑1 (MQ=255)cTCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGccc > 1:6263903/1‑51 (MQ=255) tCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGcccc > 1:7244295/1‑51 (MQ=255) tCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGcccc > 1:5267574/1‑51 (MQ=255) tGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgc > 1:3923834/1‑51 (MQ=255) tGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgc > 1:5249288/1‑51 (MQ=255) cAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctc < 1:4805553/51‑1 (MQ=255) cAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctc < 1:7043927/51‑1 (MQ=255) cAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctc > 1:3352160/1‑51 (MQ=255) aaaGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctcg > 1:6368425/1‑51 (MQ=255) aaaGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctcg > 1:2011573/1‑51 (MQ=255) aaaGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctcg < 1:1201604/51‑1 (MQ=255) aaaGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctcg < 1:2280067/51‑1 (MQ=255) aGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAgctcgct > 1:1120136/1‑51 (MQ=255) tGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCa < 1:1201955/51‑1 (MQ=255) gCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCaa < 1:1701782/51‑1 (MQ=255) ccGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAAt < 1:2539994/51‑1 (MQ=255) gTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATag < 1:2372061/51‑1 (MQ=255) aGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCt < 1:7225351/51‑1 (MQ=255) aGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCt < 1:5887945/51‑1 (MQ=255) ttGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCgg > 1:4259458/1‑51 (MQ=255) tGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGa < 1:4503589/51‑1 (MQ=255) tGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGa > 1:3673665/1‑51 (MQ=255) gCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAat > 1:5977015/1‑51 (MQ=255) cACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAata > 1:6235412/1‑51 (MQ=255) cACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAata > 1:7173830/1‑51 (MQ=255) aCCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAatat < 1:2243179/51‑1 (MQ=255) ccAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATAttt < 1:1139814/51‑1 (MQ=255) cAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTc < 1:6641865/51‑1 (MQ=255) aGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCg > 1:155733/1‑51 (MQ=255) aGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCg > 1:3397163/1‑51 (MQ=255) gTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGa < 1:3704107/51‑1 (MQ=255) tCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTC‑‑AATATTTCGACaa < 1:1571390/51‑1 (MQ=255) aGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACaa < 1:6972437/51‑1 (MQ=255) gCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAAc < 1:6223238/51‑1 (MQ=255) gCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAAc > 1:4305221/1‑51 (MQ=255) ccGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAAcc < 1:2243142/51‑1 (MQ=255) cGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTTGGAATATTTCGACAACCg < 1:4395622/51‑1 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg > 1:5539960/1‑51 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg < 1:1415291/51‑1 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg < 1:3628145/51‑1 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg < 1:59994/51‑1 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg < 1:4081473/51‑1 (MQ=255) gTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCgg > 1:6852609/1‑51 (MQ=255) tCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCggg > 1:268828/1‑51 (MQ=255) tCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCggg > 1:164793/1‑51 (MQ=255) tCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCggg > 1:1236671/1‑51 (MQ=255) ccccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGa < 1:3248219/51‑1 (MQ=255) ccccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGa < 1:2625472/51‑1 (MQ=255) ccccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGa > 1:3128896/1‑51 (MQ=255) cccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGAt < 1:38443/51‑1 (MQ=255) ccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGAtt > 1:7040245/1‑51 (MQ=255) ccTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGAtt > 1:2274500/1‑51 (MQ=255) tGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCg > 1:7071738/1‑51 (MQ=255) ccccAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCGgt < 1:6432197/51‑1 (MQ=255) cccAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCGgtg < 1:4094020/51‑1 (MQ=255) ccAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCGgtgt > 1:2403436/1‑51 (MQ=255) | CTCCTGCAAAGTGCCGTCGAAGTTTGGCACCCAGTCAGCCGTCCCCTGCCCCAGCTCGCTCAATAGCAGCTCGGAATATTTCGACAACCGGGATTCGGTGT > REL606/3099687‑3099787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |