| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 499019 = | 80 (1.000) | 10 (0.140) | 6/92 | 8.6 | 13.8% | coding (3592/4281 nt) | rhsD | rhsD element protein |
| ? | REL606 | = 3099737 | 51 (0.700) | coding (409/2259 nt) | parC | DNA topoisomerase IV subunit A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/499072‑499019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCAGGA < REL606/3099737‑3099688 ATAGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGG > 1:7045967/1‑51 TAGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGC < 1:4550418/51‑1 TAGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGC < 1:2356194/51‑1 AGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCT > 1:2028351/1‑51 AGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCT > 1:917031/1‑51 AGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCT < 1:3058385/51‑1 cgacTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTGGGGCAGG > 1:3777817/5‑49 acTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTGGGG > 1:3829015/3‑43 TCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTGGGGCAGG > 1:6778805/1‑45 CTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTGGGGCAGG > 1:2539515/1‑43 CATCATGCTGCTGCCCTGGCAGACGGTACGGCTGGGG > 1:1738953/1‑37 ATCATGCTGCTGCCCTGGCAGACGGTACGGCTGG > 1:1429778/1‑34 ATGCTGCTGCCCTGGCAGACGGTACGGCTGGGG > 1:4910844/1‑33 TGCTGCTGCCCTGGCAGACGGTACGGCTGG > 1:4383026/1‑30 CTGCTGCCCTGGCAGACGGTACGGCTGGGGCAGGGGA > 1:6382820/1‑37 TGCCCTGGCAGACGGTACGGCTGGGGCAGGGG > 1:5117400/1‑32 GCTGGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCA < 1:5249288/51‑1 GCTGGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCA < 1:3923834/51‑1 GGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCAGGA < 1:5267574/51‑1 GGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCAGGA < 1:7244295/51‑1 ATAGTACAGCCCTGATTCCTCATCATGCTGCTGCCCTGGCAGACGGTACGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/499072‑499019‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGGGCAGGGGACGGCTGACTGGGTGCCAAACTTCGACGGCACTTTGCAGGA < REL606/3099737‑3099688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |