| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 499019 = | 80 (1.000) | 10 (0.140) | 6/92 | 8.6 | 13.8% | coding (3592/4281 nt) | rhsD | rhsD element protein |
| ? | REL606 | = 3099737 | 51 (0.700) | coding (409/2259 nt) | parC | DNA topoisomerase IV subunit A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTA > REL606/498969‑499068 | atgatgAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATc > 1:842606/1‑51 (MQ=255)atgatgAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATc > 1:6425966/1‑51 (MQ=255)atgatgAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATc > 1:505173/1‑51 (MQ=255)atgatgAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATc < 1:4945642/51‑1 (MQ=255) gatgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAg < 1:3662882/51‑1 (MQ=255) gatgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAg > 1:2292102/1‑51 (MQ=255) atgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGc < 1:1895101/51‑1 (MQ=255) atgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGc > 1:797662/1‑51 (MQ=255) atgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGc > 1:3750021/1‑51 (MQ=255) atgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGc < 1:1076145/51‑1 (MQ=255) tgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAgtc < 1:5594080/51‑3 (MQ=255) tgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGcc > 1:2162560/1‑51 (MQ=255) tgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGcc < 1:706813/51‑1 (MQ=255) tgaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGcc > 1:2284161/1‑51 (MQ=255) gaATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCg > 1:2570838/1‑51 (MQ=255) aaTGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGt > 1:3489946/1‑51 (MQ=255) tGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTAc < 1:5874282/51‑1 (MQ=255) gCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTc > 1:4787537/1‑51 (MQ=255) gCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTc > 1:6984426/1‑51 (MQ=255) gCAACCAGCTTAATGAGGAGAACCCACATCATGTGTATCAGCCGTACCGTc > 1:5339636/1‑51 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCt > 1:7046342/1‑50 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTg < 1:6764722/51‑1 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTg > 1:1131672/1‑51 (MQ=255) aaCCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTg < 1:3315711/51‑1 (MQ=255) aGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAg < 1:4950763/51‑1 (MQ=255) cTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAggg < 1:3667808/51‑1 (MQ=255) cTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAggg < 1:7271343/51‑1 (MQ=255) ttAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgc > 1:7034836/1‑51 (MQ=255) ttAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgc > 1:3023079/1‑51 (MQ=255) ttAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgc > 1:3076950/1‑51 (MQ=255) tAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgca > 1:411174/1‑51 (MQ=255) aaTGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcag < 1:3487506/51‑1 (MQ=255) aaTGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcag > 1:6211428/1‑51 (MQ=255) aaTGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcag > 1:2196390/1‑51 (MQ=255) aTGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagc > 1:3517115/1‑51 (MQ=255) tGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagca > 1:2201027/1‑51 (MQ=255) gaggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcag < 1:410841/51‑1 (MQ=255) gaggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcag > 1:1752858/1‑51 (MQ=255) gaggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcag < 1:4594408/51‑1 (MQ=255) aggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcagc < 1:5491265/51‑1 (MQ=255) aggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcagc < 1:6471048/51‑1 (MQ=255) ggagAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagcagca > 1:3082261/1‑51 (MQ=255) gagaACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCat < 1:3155883/51‑1 (MQ=255) agaACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatg < 1:480622/51‑1 (MQ=255) agaACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatg > 1:6509572/1‑51 (MQ=255) agaACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatg > 1:4258183/1‑51 (MQ=255) gaACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatga > 1:751317/1‑51 (MQ=255) aaCCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatgat > 1:1587054/1‑51 (MQ=255) aaCCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatgat > 1:5177974/1‑51 (MQ=255) aCCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatgatg > 1:5074052/1‑51 (MQ=255) aCCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatgatg < 1:2419057/51‑1 (MQ=255) cccGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatga < 1:7155085/48‑1 (MQ=255) ccGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgc < 1:4817536/37‑1 (MQ=255) ccGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAg < 1:6544899/51‑1 (MQ=255) ccGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAg < 1:5011415/51‑1 (MQ=255) ccGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAg > 1:4622258/1‑51 (MQ=255) cGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAgg > 1:5054359/1‑51 (MQ=255) cGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAgg > 1:2011372/1‑51 (MQ=255) cGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAgg > 1:3893847/1‑51 (MQ=255) catcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGaa < 1:1047800/51‑1 (MQ=255) catcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGaa < 1:4645885/51‑1 (MQ=255) catcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGaa > 1:7198066/1‑51 (MQ=255) catcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGaa < 1:3587960/51‑1 (MQ=255) atcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGaa < 1:4846423/50‑1 (MQ=255) atcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGANt < 1:4582704/51‑1 (MQ=255) atcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAAt > 1:388319/1‑51 (MQ=255) tcatGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATc < 1:1219834/51‑1 (MQ=255) catGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatga < 1:2279331/41‑1 (MQ=255) catGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCa > 1:2557839/1‑51 (MQ=255) catGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCa < 1:7175972/51‑1 (MQ=255) catGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCa > 1:822706/1‑51 (MQ=255) atGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAg > 1:2914491/1‑51 (MQ=255) atGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAg > 1:2649318/1‑51 (MQ=255) atGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAg < 1:3254989/51‑1 (MQ=255) atGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAg > 1:6976132/1‑51 (MQ=255) atGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAg > 1:6073357/1‑51 (MQ=255) tgtgTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAgg > 1:5680662/1‑51 (MQ=255) tgtATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGc > 1:498220/1‑51 (MQ=255) aTCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGt > 1:1992370/1‑51 (MQ=255) tCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTa > 1:2021459/1‑51 (MQ=255) | ATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTA > REL606/498969‑499068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |