Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 3,841,192 IS150 (+) +3 bp coding (389‑391/1074 nt) recF ← recombination protein F

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3841192 =0 (0.000)81 (1.020) 60/100 0.1 100% coding (391/1074 nt) recF recombination protein F
?REL606 = 3894996 NA (NA)noncoding (1443/1443 nt) IS150 repeat region
* ? REL606 = 38411940 (0.000)128 (1.680) 64/96 0.0 100% coding (389/1074 nt) recF recombination protein F
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 224 total aligned reads displayed.

ATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT  >  REL606/3841144‑3841244
                                                  |                                                  
aTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                    >  1:6805925/1‑51 (MQ=255)
 tCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTt                                                   <  1:5262174‑M1/51‑2 (MQ=255)
 tCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTt                                                   <  1:3207444‑M1/51‑2 (MQ=255)
 acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAttt                                                   <  1:1353055‑M1/4‑1 (MQ=255)
   cGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgt                                                 <  1:4609450‑M1/51‑4 (MQ=255)
   cGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgt                                                 >  1:1494485‑M1/1‑48 (MQ=255)
     ggTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtac                                               >  1:1399709‑M1/1‑46 (MQ=255)
     atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTTgggg                                               <  1:483418‑M1/8‑1 (MQ=255)
      tatgcctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgc                                              >  1:431224‑M1/43‑51 (MQ=255)
       ttCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactg                                             >  1:5319605‑M1/1‑44 (MQ=255)
       ttCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactg                                             <  1:2961697‑M1/51‑8 (MQ=255)
       atgcctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgcc                                             <  1:3934899‑M1/10‑1 (MQ=255)
        tCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgc                                            >  1:6533572‑M1/1‑43 (MQ=255)
         cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgca                                           >  1:7074753‑M1/1‑42 (MQ=255)
         cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgca                                           >  1:2564701‑M1/1‑42 (MQ=255)
          gTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcac                                          <  1:5742500‑M1/51‑11 (MQ=255)
          cctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgccgcc                                          >  1:5593870‑M1/39‑51 (MQ=255)
          cctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgccgcc                                          >  1:4528969‑M1/39‑51 (MQ=255)
           ctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGGccgccg                                         >  1:584237‑M1/38‑51 (MQ=255)
            tgtgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcaccc                                        <  1:1244836‑M1/51‑13 (MQ=255)
             gtgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcaccca                                       <  1:203806‑M1/51‑14 (MQ=255)
             cgtgtttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGtt                                       <  1:352252‑M1/16‑1 (MQ=255)
              tgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccat                                      <  1:6366218‑M1/51‑15 (MQ=255)
              gtgtttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTg                                      <  1:5221914‑M1/17‑1 (MQ=255)
               gAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatt                                     <  1:1004535‑M1/51‑16 (MQ=255)
               gAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatt                                     <  1:6407463‑M1/51‑16 (MQ=255)
                 tttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagt                                   >  1:2283127‑M1/32‑51 (MQ=255)
                 tttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagt                                   >  1:1688909‑M1/32‑51 (MQ=255)
                 aaGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatttt                                   <  1:3435817‑M1/51‑18 (MQ=255)
                  ttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagta                                  <  1:7051194‑M1/21‑1 (MQ=255)
                   taactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaa                                 >  1:310000‑M1/30‑51 (MQ=255)
                   taactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaa                                 <  1:5722954‑M1/22‑1 (MQ=255)
                   gCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgt                                 >  1:5952284‑M1/1‑32 (MQ=255)
                    cATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgtt                                >  1:6728955‑M1/1‑31 (MQ=255)
                      tCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgg                              <  1:6602759‑M1/51‑23 (MQ=255)
                      tCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgg                              >  1:1073925‑M1/1‑29 (MQ=255)
                      ctgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaaagt                              <  1:3274818‑M1/25‑1 (MQ=255)
                       ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga                             <  1:5105650‑M1/51‑24 (MQ=255)
                       ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga                             <  1:5475109‑M1/51‑24 (MQ=255)
                       ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga                             <  1:3582772‑M1/51‑24 (MQ=255)
                        cccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggac                            >  1:268192‑M1/1‑27 (MQ=255)
                         tccaactttttggggtcagtacaATTTGGGGCCGCCGTTGAgtaaagtaaa                           <  1:3148382‑M1/28‑1 (MQ=255)
                          ccaactttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAAc                          >  1:7099073‑M1/23‑51 (MQ=255)
                          cAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacga                          >  1:2530275‑M1/1‑25 (MQ=255)
                          cAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacga                          >  1:1205224‑M1/1‑25 (MQ=255)
                           aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat                         <  1:6009314‑M1/51‑28 (MQ=255)
                           aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat                         >  1:5012822‑M1/1‑24 (MQ=255)
                           aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat                         <  1:5058740‑M1/51‑28 (MQ=255)
                            gTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatg                        >  1:5675572‑M1/1‑23 (MQ=255)
                             tCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatga                       <  1:6540820‑M1/51‑30 (MQ=255)
                             tCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatga                       <  1:4164650‑M1/51‑30 (MQ=255)
                             actttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                       <  1:1866294‑M1/32‑1 (MQ=255)
                              cGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaa                      <  1:5853860‑M1/51‑31 (MQ=255)
                              cGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaa                      <  1:4737862‑M1/51‑31 (MQ=255)
                               tttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                     <  1:6921331‑M1/34‑1 (MQ=255)
                                ttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCt                    <  1:3831001‑M1/35‑1 (MQ=255)
                                aGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaat                    >  1:3763815‑M1/1‑19 (MQ=255)
                                 tttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg                   <  1:7242590‑M1/36‑1 (MQ=255)
                                  gAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgg                  <  1:3461838‑M1/51‑35 (MQ=255)
                                   tggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGc                 >  1:4022502‑M1/14‑51 (MQ=255)
                                   aaTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgga                 >  1:6258954‑M1/1‑16 (MQ=255)
                                   aaTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgga                 <  1:6063538‑M1/51‑36 (MQ=255)
                                    ggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTGAACCCTTCTGGCg                >  1:6864125‑M1/13‑51 (MQ=255)
                                    ggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCg                <  1:3574343‑M1/39‑1 (MQ=255)
                                    aTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaa                <  1:1993501‑M1/51‑37 (MQ=255)
                                    aTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaa                <  1:6350491‑M1/51‑37 (MQ=255)
                                     tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat               <  1:5962638‑M1/51‑38 (MQ=255)
                                     tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat               <  1:603294‑M1/51‑38 (MQ=255)
                                     tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat               >  1:4440898‑M1/1‑14 (MQ=255)
                                      ggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt              >  1:3048984‑M1/11‑51 (MQ=255)
                                      ggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt              <  1:666198‑M1/41‑1 (MQ=255)
                                      gCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaata              <  1:2294883‑M1/51‑39 (MQ=255)
                                       gtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa             >  1:3972841‑M1/10‑51 (MQ=255)
                                       ctctTCTGTATTtgtactgcacccattttgttggacgatgaaatggaatag             <  1:212146‑M1/51‑40 (MQ=255)
                                       ctctTCTGTATTtgtactgcacccattttgttggacgatgaaatggaatag             <  1:4109413‑M1/51‑40 (MQ=255)
                                        tcttctGTATTtgtactgcacccattttgttggacgatgaaatggaatagc            >  1:1445294‑M1/1‑11 (MQ=255)
                                        tcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAt            <  1:540794‑M1/43‑1 (MQ=255)
                                         cagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATc           >  1:586664‑M1/8‑51 (MQ=255)
                                          ttctGTATTtgtactgcacccattttgttggacgatgaaatggaatagccc          >  1:4357001‑M1/1‑9 (MQ=255)
                                           gtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa         >  1:4824341‑M1/6‑51 (MQ=255)
                                            tacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAc        >  1:3331883‑M1/5‑51 (MQ=255)
                                             acaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt       >  1:6351062‑M1/4‑51 (MQ=255)
                                              gTATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa      >  1:4566167‑M1/1‑5 (MQ=255)
                                              gTATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa      <  1:7006561‑M1/51‑47 (MQ=255)
                                               tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat     <  1:2971030‑M1/51‑48 (MQ=255)
                                               tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat     >  1:6179697‑M1/1‑4 (MQ=255)
                                               tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat     <  1:6113511‑M1/51‑48 (MQ=255)
                                               aATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGc     <  1:6003352‑M1/50‑1 (MQ=255)
                                                aTTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa    <  1:4114539/51‑1 (MQ=255)
                                                aTTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa    <  1:1503295/51‑1 (MQ=255)
                                                 tttgtactgcacccattttgttggacgatgaaatggaatagcccctaatat   >  1:5432983‑M1/1‑2 (MQ=255)
                                                 tttgtactgcacccattttgttggacgatgaaatggaatagcccctaatat   <  1:5820744‑M1/51‑50 (MQ=255)
                                                 tttGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt   >  1:4289410/1‑51 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  >  1:6721321‑M1/1‑1 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  >  1:885207‑M1/1‑1 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  >  1:5138408‑M1/1‑1 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  >  1:1913215‑M1/1‑1 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  <  1:5650525‑M1/51‑51 (MQ=255)
                                                  ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg  <  1:854661‑M1/51‑51 (MQ=255)
                                                  ttGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCGACTGCAtt  <  1:2987855/51‑1 (MQ=255)
                                                  |                                                  
ATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT  >  REL606/3841144‑3841244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.