Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
JC JC | REL606 | 3,841,192 | IS150 (+) +3 bp | coding (389‑391/1074 nt) | recF ← | recombination protein F |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3841192 = | 0 (0.000) | 81 (1.020) | 60/100 | 0.1 | 100% | coding (391/1074 nt) | recF | recombination protein F |
? | REL606 | = 3894996 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | = 3841194 | 0 (0.000) | 128 (1.680) | 64/96 | 0.0 | 100% | coding (389/1074 nt) | recF | recombination protein F |
? | REL606 | 3893554 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
Only 100 of 224 total aligned reads displayed.
ATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT > REL606/3841144‑3841244 | aTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTAtt > 1:6805925/1‑51 (MQ=255) tCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTt < 1:5262174‑M1/51‑2 (MQ=255) tCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTt < 1:3207444‑M1/51‑2 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAttt < 1:1353055‑M1/4‑1 (MQ=255) cGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgt < 1:4609450‑M1/51‑4 (MQ=255) cGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgt > 1:1494485‑M1/1‑48 (MQ=255) ggTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtac > 1:1399709‑M1/1‑46 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTTgggg < 1:483418‑M1/8‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgc > 1:431224‑M1/43‑51 (MQ=255) ttCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactg > 1:5319605‑M1/1‑44 (MQ=255) ttCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactg < 1:2961697‑M1/51‑8 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgcc < 1:3934899‑M1/10‑1 (MQ=255) tCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgc > 1:6533572‑M1/1‑43 (MQ=255) cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgca > 1:7074753‑M1/1‑42 (MQ=255) cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgca > 1:2564701‑M1/1‑42 (MQ=255) gTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcac < 1:5742500‑M1/51‑11 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgccgcc > 1:5593870‑M1/39‑51 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGgccgcc > 1:4528969‑M1/39‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTTGGGGccgccg > 1:584237‑M1/38‑51 (MQ=255) tgtgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcaccc < 1:1244836‑M1/51‑13 (MQ=255) gtgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcaccca < 1:203806‑M1/51‑14 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGtt < 1:352252‑M1/16‑1 (MQ=255) tgAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccat < 1:6366218‑M1/51‑15 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTg < 1:5221914‑M1/17‑1 (MQ=255) gAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatt < 1:1004535‑M1/51‑16 (MQ=255) gAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatt < 1:6407463‑M1/51‑16 (MQ=255) tttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagt > 1:2283127‑M1/32‑51 (MQ=255) tttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagt > 1:1688909‑M1/32‑51 (MQ=255) aaGCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccatttt < 1:3435817‑M1/51‑18 (MQ=255) ttaactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagta < 1:7051194‑M1/21‑1 (MQ=255) taactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaa > 1:310000‑M1/30‑51 (MQ=255) taactgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaa < 1:5722954‑M1/22‑1 (MQ=255) gCATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgt > 1:5952284‑M1/1‑32 (MQ=255) cATCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgtt > 1:6728955‑M1/1‑31 (MQ=255) tCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgg < 1:6602759‑M1/51‑23 (MQ=255) tCCCCAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgg > 1:1073925‑M1/1‑29 (MQ=255) ctgtccaactttttggggtcagtacaATTTGGGGCCGCCGTTGagtaaagt < 1:3274818‑M1/25‑1 (MQ=255) ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga < 1:5105650‑M1/51‑24 (MQ=255) ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga < 1:5475109‑M1/51‑24 (MQ=255) ccccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttgga < 1:3582772‑M1/51‑24 (MQ=255) cccAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggac > 1:268192‑M1/1‑27 (MQ=255) tccaactttttggggtcagtacaATTTGGGGCCGCCGTTGAgtaaagtaaa < 1:3148382‑M1/28‑1 (MQ=255) ccaactttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAAc > 1:7099073‑M1/23‑51 (MQ=255) cAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacga > 1:2530275‑M1/1‑25 (MQ=255) cAGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacga > 1:1205224‑M1/1‑25 (MQ=255) aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat < 1:6009314‑M1/51‑28 (MQ=255) aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat > 1:5012822‑M1/1‑24 (MQ=255) aGTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgat < 1:5058740‑M1/51‑28 (MQ=255) gTCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatg > 1:5675572‑M1/1‑23 (MQ=255) tCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatga < 1:6540820‑M1/51‑30 (MQ=255) tCGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatga < 1:4164650‑M1/51‑30 (MQ=255) actttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt < 1:1866294‑M1/32‑1 (MQ=255) cGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaa < 1:5853860‑M1/51‑31 (MQ=255) cGAGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaa < 1:4737862‑M1/51‑31 (MQ=255) tttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc < 1:6921331‑M1/34‑1 (MQ=255) ttttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCt < 1:3831001‑M1/35‑1 (MQ=255) aGGAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaat > 1:3763815‑M1/1‑19 (MQ=255) tttggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg < 1:7242590‑M1/36‑1 (MQ=255) gAATGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgg < 1:3461838‑M1/51‑35 (MQ=255) tggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGc > 1:4022502‑M1/14‑51 (MQ=255) aaTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgga > 1:6258954‑M1/1‑16 (MQ=255) aaTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatgga < 1:6063538‑M1/51‑36 (MQ=255) ggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTGAACCCTTCTGGCg > 1:6864125‑M1/13‑51 (MQ=255) ggggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCg < 1:3574343‑M1/39‑1 (MQ=255) aTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaa < 1:1993501‑M1/51‑37 (MQ=255) aTGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaa < 1:6350491‑M1/51‑37 (MQ=255) tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat < 1:5962638‑M1/51‑38 (MQ=255) tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat < 1:603294‑M1/51‑38 (MQ=255) tGCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaat > 1:4440898‑M1/1‑14 (MQ=255) ggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt > 1:3048984‑M1/11‑51 (MQ=255) ggtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt < 1:666198‑M1/41‑1 (MQ=255) gCTCTTCTGTATTtgtactgcacccattttgttggacgatgaaatggaata < 1:2294883‑M1/51‑39 (MQ=255) gtcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa > 1:3972841‑M1/10‑51 (MQ=255) ctctTCTGTATTtgtactgcacccattttgttggacgatgaaatggaatag < 1:212146‑M1/51‑40 (MQ=255) ctctTCTGTATTtgtactgcacccattttgttggacgatgaaatggaatag < 1:4109413‑M1/51‑40 (MQ=255) tcttctGTATTtgtactgcacccattttgttggacgatgaaatggaatagc > 1:1445294‑M1/1‑11 (MQ=255) tcagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAt < 1:540794‑M1/43‑1 (MQ=255) cagtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATc > 1:586664‑M1/8‑51 (MQ=255) ttctGTATTtgtactgcacccattttgttggacgatgaaatggaatagccc > 1:4357001‑M1/1‑9 (MQ=255) gtacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa > 1:4824341‑M1/6‑51 (MQ=255) tacaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAc > 1:3331883‑M1/5‑51 (MQ=255) acaATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt > 1:6351062‑M1/4‑51 (MQ=255) gTATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa > 1:4566167‑M1/1‑5 (MQ=255) gTATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaa < 1:7006561‑M1/51‑47 (MQ=255) tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:2971030‑M1/51‑48 (MQ=255) tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat > 1:6179697‑M1/1‑4 (MQ=255) tATTtgtactgcacccattttgttggacgatgaaatggaatagcccctaat < 1:6113511‑M1/51‑48 (MQ=255) aATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGc < 1:6003352‑M1/50‑1 (MQ=255) aTTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa < 1:4114539/51‑1 (MQ=255) aTTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa < 1:1503295/51‑1 (MQ=255) tttgtactgcacccattttgttggacgatgaaatggaatagcccctaatat > 1:5432983‑M1/1‑2 (MQ=255) tttgtactgcacccattttgttggacgatgaaatggaatagcccctaatat < 1:5820744‑M1/51‑50 (MQ=255) tttGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt > 1:4289410/1‑51 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg > 1:6721321‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg > 1:885207‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg > 1:5138408‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg > 1:1913215‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg < 1:5650525‑M1/51‑51 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg < 1:854661‑M1/51‑51 (MQ=255) ttGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCGACTGCAtt < 1:2987855/51‑1 (MQ=255) | ATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT > REL606/3841144‑3841244 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |