Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 55 [0] | [0] 90 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 54 (0.690) | 43/98 | 0.6 | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 83 (1.090) | 52/96 | 0.2 | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
GGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGA > REL606/2397478‑2397574 | ggaggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCActc > 1:3000213/1‑51 (MQ=255) aGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtg > 1:5088670‑M1/1‑49 (MQ=255) aGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtg < 1:6603582‑M1/51‑3 (MQ=255) ggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt > 1:2542310‑M1/1‑48 (MQ=255) ggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt < 1:1841845‑M1/51‑4 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtac < 1:2627770‑M1/51‑6 (MQ=255) ttCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact > 1:2485518‑M1/1‑45 (MQ=255) ttCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact < 1:6269662‑M1/51‑7 (MQ=255) cACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccc > 1:1488407‑M1/1‑40 (MQ=255) cACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccc < 1:6851666‑M1/51‑12 (MQ=255) aCCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgacccc > 1:6839150‑M1/1‑39 (MQ=255) aCCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgacccc > 1:5451778‑M1/1‑39 (MQ=255) ccAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgacccca < 1:4161441‑M1/51‑14 (MQ=255) cAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaa < 1:3665930‑M1/51‑15 (MQ=255) agagAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaa < 1:5779631‑M1/51‑16 (MQ=255) agagAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaa < 1:3916039‑M1/51‑16 (MQ=255) agagAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaa < 1:6609783‑M1/51‑16 (MQ=255) gagaAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaa > 1:2764003‑M1/1‑35 (MQ=255) agaAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa > 1:2096668‑M1/1‑34 (MQ=255) agaAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa < 1:6632142‑M1/51‑18 (MQ=255) aaaaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagt > 1:1382050‑M1/1‑32 (MQ=255) aaaaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagt > 1:396857‑M1/1‑32 (MQ=255) aaaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagtt > 1:1565489‑M1/1‑31 (MQ=255) aaaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagtt > 1:3800926‑M1/1‑31 (MQ=255) aaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttgg < 1:2700337‑M1/51‑23 (MQ=255) aTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttgga > 1:710027‑M1/1‑28 (MQ=255) ccccccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggaca > 1:5772451‑M1/1‑26 (MQ=255) ccccccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggaca > 1:4710494‑M1/1‑26 (MQ=255) ccccccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggac < 1:811240‑M1/50‑25 (MQ=255) cccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagtt > 1:6583840‑M1/1‑23 (MQ=255) cccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagtt < 1:519540‑M1/43‑21 (MQ=255) ccTCGACATGGTGGCCCCACTCtgtactgaccccaaaagttggacagttaa < 1:1263470‑M1/51‑30 (MQ=255) ccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagtta > 1:3262745‑M1/1‑22 (MQ=255) ccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagtta < 1:2609976‑M1/51‑30 (MQ=255) ccTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagtta < 1:4455531‑M1/51‑30 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa < 1:3011246‑M1/51‑31 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa < 1:1885329‑M1/51‑31 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa < 1:3468992‑M1/51‑31 (MQ=255) tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaa > 1:4730869‑M1/1‑20 (MQ=255) tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaa < 1:5261948‑M1/51‑32 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac < 1:6697409‑M1/51‑33 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac < 1:7227021‑M1/51‑33 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaa > 1:3813920‑M1/1‑19 (MQ=255) gACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaaca > 1:1084294‑M1/1‑18 (MQ=255) gACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaaca < 1:2296283‑M1/51‑34 (MQ=255) aCATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacac < 1:2852399‑M1/51‑35 (MQ=255) aTGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacga > 1:967155‑M1/1‑15 (MQ=255) aTGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacga < 1:6421881‑M1/51‑37 (MQ=255) ggtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgagg < 1:5877883‑M1/51‑39 (MQ=255) gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggc < 1:3720266‑M1/51‑40 (MQ=255) gCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcata < 1:3464693‑M1/51‑43 (MQ=255) cccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatata < 1:3611424‑M1/51‑45 (MQ=255) cccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatata > 1:4887339‑M1/1‑7 (MQ=255) ccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 1:1775377‑M1/1‑6 (MQ=255) cACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg < 1:2877587‑M1/51‑47 (MQ=255) | GGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGA > REL606/2397478‑2397574 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |